View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10679_low_3 (Length: 356)
Name: NF10679_low_3
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10679_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 355
Target Start/End: Complemental strand, 4555282 - 4554938
Alignment:
| Q |
17 |
taaacaataaagtaataatcaaatgatacagagagaacaaaagnnnnnnnnncatacaaacatattaacgacaaaataagtgggttgattgttgattgag |
116 |
Q |
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| T |
4555282 |
taaacaataaagtaataatcaaatgatacaaagagaacaaaagaaaaaaa--catacaaacatgttaacgacaaaataagtgggttgattgttgattgag |
4555185 |
T |
|
| Q |
117 |
ttccatgttgtatcaaggtttggttcttgattaattttgtaatgattt-------gatttgacatgtaaggttatataccttatttgacattaaatgaga |
209 |
Q |
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| T |
4555184 |
ttccatgttggatcaaggtttggttcttgattaatttcgtaataaatttgataatgatttgacatgtaaggttatgcaccttatttgacattacatgaga |
4555085 |
T |
|
| Q |
210 |
gttattatcaagtatagttagctatcttagtttttatattcgatgttaccactattatattactgtattcctacaccatgactatataagttgtaacctc |
309 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
4555084 |
gttattatcaagtagagttagctatcttagtttttatattcgatgttaccactattgtattactgtattcctagaccatgactatataagttgtaacctc |
4554985 |
T |
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| Q |
310 |
tatcatttgatcaataatgagaatattatt-attcacttcttctctc |
355 |
Q |
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| T |
4554984 |
tatcatttgatcaataatgagaatattattcattcacttcttctctc |
4554938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 4938819 - 4938708
Alignment:
| Q |
228 |
tagctatcttagtttttatattcgatgttaccactattatattactgtattcctacaccatgactatataagttgtaacctctatcatttgatcaataat |
327 |
Q |
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| T |
4938819 |
tagctatctcagtttctatattctatgtcactactactgtactactgtgctcctgcaccatgcctatataagttgtaatccttatcatttgatcaataac |
4938720 |
T |
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| Q |
328 |
gagaatattatt |
339 |
Q |
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| T |
4938719 |
aagaatattatt |
4938708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 5023909 - 5023798
Alignment:
| Q |
228 |
tagctatcttagtttttatattcgatgttaccactattatattactgtattcctacaccatgactatataagttgtaacctctatcatttgatcaataat |
327 |
Q |
| |
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||||||||| ||||| ||||||| |||| || |||| | || |||||| |||| ||||||| ||||||||||||||| | ||||||||||||||||| |
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| T |
5023909 |
tagctatctcagtttctatattctatgtcactactactgtactactgtgctcctgcaccatgcctatataagttgtaatccttatcatttgatcaataac |
5023810 |
T |
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| Q |
328 |
gagaatattatt |
339 |
Q |
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||||||||||| |
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| T |
5023809 |
aagaatattatt |
5023798 |
T |
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