View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10679_low_4 (Length: 354)

Name: NF10679_low_4
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10679_low_4
NF10679_low_4
[»] chr1 (2 HSPs)
chr1 (232-347)||(39367135-39367250)
chr1 (271-347)||(12190687-12190762)
[»] chr2 (2 HSPs)
chr2 (254-332)||(27150272-27150350)
chr2 (296-347)||(7703424-7703475)
[»] chr4 (2 HSPs)
chr4 (260-347)||(24558121-24558206)
chr4 (232-281)||(24558071-24558121)
[»] chr5 (1 HSPs)
chr5 (278-326)||(31571741-31571789)
[»] chr6 (1 HSPs)
chr6 (263-326)||(24631335-24631398)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 232 - 347
Target Start/End: Original strand, 39367135 - 39367250
Alignment:
Q  232 gtggctcacaatgagtttgtcttttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgt 331  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |||||||||| || ||||    
T  39367135 gtggctcgcaatgagtttgttttttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaaaaaatgtttaacatgattcttgtgt 39367234  T
Q  332 tttcctgttcatctct 347  Q
    | ||||||||||||||    
T  39367235 tgtcctgttcatctct 39367250  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 347
Target Start/End: Complemental strand, 12190762 - 12190687
Alignment:
Q  271 taggaagtcttatgagtgagtgttgttattgttgaacaaga-aattaacatgatcctcgtgttttcctgttcatctct 347  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||| ||||  |||| ||||||||||||||    
T  12190762 taggaagtcttatgagtgagtgttgttattgttgaacaagagttttaacatgttcct--tgttatcctgttcatctct 12190687  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 27150272 - 27150350
Alignment:
Q  254 tttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgtt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  27150272 tttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagagtttaacatgatccttgtgtt 27150350  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 7703475 - 7703424
Alignment:
Q  296 ttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctct 347  Q
    ||||||||||||||||  ||||||||||||| ||||| ||||||||||||||    
T  7703475 ttattgttgaacaagagtttaacatgatccttgtgttgtcctgttcatctct 7703424  T

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Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 260 - 347
Target Start/End: Original strand, 24558121 - 24558206
Alignment:
Q  260 ttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctct 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||  |||| || |||||||||||    
T  24558121 ttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagagcttaacacgatcct--tgttgtcttgttcatctct 24558206  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 281
Target Start/End: Original strand, 24558071 - 24558121
Alignment:
Q  232 gtggctcacaatgagtttgtcttt-tgagttattaatgtgtaggaagtctt 281  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  24558071 gtggctctcaatgagtttgtctttctgagttattaatgtgtaggaagtctt 24558121  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 31571789 - 31571741
Alignment:
Q  278 tcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 326  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  31571789 tcttatgagtgagtgttgttattgttgaacaagagtttaacatgatcct 31571741  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 326
Target Start/End: Original strand, 24631335 - 24631398
Alignment:
Q  263 ttaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 326  Q
    ||||| ||||| || ||||||||||||| |||||| |||||||||||||  |||| ||||||||    
T  24631335 ttaatttgtagaaaatcttatgagtgagagttgttcttgttgaacaagagtttaatatgatcct 24631398  T

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