View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10679_low_6 (Length: 300)

Name: NF10679_low_6
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10679_low_6
NF10679_low_6
[»] chr8 (4 HSPs)
chr8 (171-290)||(41841390-41841509)
chr8 (166-287)||(42221082-42221203)
chr8 (19-80)||(41841955-41842016)
chr8 (87-128)||(42221251-42221292)
[»] chr5 (1 HSPs)
chr5 (80-287)||(1716689-1716906)
[»] chr4 (3 HSPs)
chr4 (79-168)||(11652665-11652754)
chr4 (166-290)||(3461378-3461499)
chr4 (80-117)||(3461557-3461594)
[»] chr2 (1 HSPs)
chr2 (233-287)||(2841259-2841313)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 41841509 - 41841390
Alignment:
Q  171 ccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgtatcctt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841509 ccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgtatcctt 41841410  T
Q  271 tgcttggaatttggtctctg 290  Q
    ||||||||||||||||||||    
T  41841409 tgcttggaatttggtctctg 41841390  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 166 - 287
Target Start/End: Complemental strand, 42221203 - 42221082
Alignment:
Q  166 ttcatccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgta 265  Q
    |||||||||  |||||||||| ||||||| ||||||||||||||||||||||  ||| |||| |||||||||||||||||||||||||||||||||  ||    
T  42221203 ttcatccagggattaaaaatattcattggagagcttctcaaaatctgtaaaacgtattgttggcatgagatttgtccttgttggaagctcaaatcatata 42221104  T
Q  266 tcctttgcttggaatttggtct 287  Q
    ||||||| |||||| |||||||    
T  42221103 tcctttgtttggaaattggtct 42221082  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 41842016 - 41841955
Alignment:
Q  19 cttataccattcctcatttcctcctaatggctccagtagcttcgtatcggcagattctatgg 80  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41842016 cttataccattcctcatttcctccttatggctccagtagcttcgtatcggcagattctatgg 41841955  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Complemental strand, 42221292 - 42221251
Alignment:
Q  87 gaattagaagaaaaggaggaagaagaaagactcaaattcaat 128  Q
    |||||||||||||| |||| |||||||||||||||| |||||    
T  42221292 gaattagaagaaaaagagggagaagaaagactcaaactcaat 42221251  T

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Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 80 - 287
Target Start/End: Complemental strand, 1716906 - 1716689
Alignment:
Q  80 gagtttggaattagaagaaaaggaggaagaagaaagactcaaattcaatgcacagta-----gccatcattata------ttttaattccctttccattc 168  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||| || || |     ||||||||| |       |||  ||||  ||||| |||    
T  1716906 gagtttggaattagaagaaaaggagggagaagaaagactcaaactcaattcataggactgcagccatcatttttattcgctttccattcattttcc-ttc 1716808  T
Q  169 atccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgtatcc 268  Q
    ||||||  |||||||||| ||||||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  1716807 atccagggattaaaaatattcattggagagcttctcaaaatctgtaaaatgtattgttggcatgagatttgtccttgttggaagctcaaatcacgtatcc 1716708  T
Q  269 tttgcttggaatttggtct 287  Q
    |||| |||||| |||||||    
T  1716707 tttgtttggaaattggtct 1716689  T

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Target: chr4 (Bit Score: 74; Significance: 6e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 11652754 - 11652665
Alignment:
Q  79 ggagtttggaattagaagaaaaggaggaagaagaaagactcaaattcaatgcacagtagccatcattatattttaattccctttccattc 168  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||    
T  11652754 ggagtttggaattagaagaaaaggagggagaagaaagactcaaattcaattcacagtagccaacattatatttcaattccctttccattc 11652665  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 166 - 290
Target Start/End: Complemental strand, 3461499 - 3461378
Alignment:
Q  166 ttcatccagcaattaaaaataatcattggtgagcttctcaaaatctgtaaaatatatcgttgacatgagatttgtccttgttggaagctcaaatcacgta 265  Q
    |||||| ||| |||||||||| ||||||| ||||||||||||||||||||||| |||   || ||  ||||||||||||||||||||||||||||| |||    
T  3461499 ttcatctagcgattaaaaatattcattggagagcttctcaaaatctgtaaaatgtat---tggcaaaagatttgtccttgttggaagctcaaatcatgta 3461403  T
Q  266 tcctttgcttggaatttggtctctg 290  Q
    ||||||||||| || ||||||||||    
T  3461402 tcctttgcttgaaagttggtctctg 3461378  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 117
Target Start/End: Complemental strand, 3461594 - 3461557
Alignment:
Q  80 gagtttggaattagaagaaaaggaggaagaagaaagac 117  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  3461594 gagtttggaattagaagaaaagaagggagaagaaagac 3461557  T

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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 233 - 287
Target Start/End: Complemental strand, 2841313 - 2841259
Alignment:
Q  233 agatttgtccttgttggaagctcaaatcacgtatcctttgcttggaatttggtct 287  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  2841313 agatttgtccttgttggaagctcaaatcacgcatcctttgcttggaaattggtct 2841259  T

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