View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10679_low_8 (Length: 291)
Name: NF10679_low_8
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10679_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 52052217 - 52051943
Alignment:
| Q |
1 |
gttgagggtaatggtaattagtgtcatgggttgttgatgttagtgctgcagtgttatgatcagaatcaagactactatttttggtaattgataagattgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
52052217 |
gttgagggtaatggtaattagtgtcatgggttgttgatgttagtgctgcagtgttatgatcagaatcaagactactatttttagtaattgataagattgt |
52052118 |
T |
|
| Q |
101 |
tgaagtagcagcaggagcatctgtgtttgttgttttcaaaacttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52052117 |
tgaagtagcagcaggagcatctgtgtttgttgttttcaaaacttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtacttt |
52052018 |
T |
|
| Q |
201 |
gaatctggatatgcttcttttgaacatctccatttctttccatctgttcttctacacctccctggctctgggtct |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
52052017 |
gaatctggatatgcttcttttgaacatctccatttctttccatctgttcttctacacctacctggctctgggtct |
52051943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 131 - 271
Target Start/End: Original strand, 18199789 - 18199929
Alignment:
| Q |
131 |
tgttttcaaaacttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctc |
230 |
Q |
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|||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
18199789 |
tgttttaacaacttccacaggctttcttgaacggttttttcctctatgcatgtgtctttcacagtatttagaatctggatatgcttcttttgagcatctc |
18199888 |
T |
|
| Q |
231 |
catttctttccatctgttcttctacacctccctggctctgg |
271 |
Q |
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| T |
18199889 |
catttttttccatctgttcttctacatctacctggctctgg |
18199929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 143 - 275
Target Start/End: Original strand, 7246548 - 7246680
Alignment:
| Q |
143 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtactttgaatctggatatgcttcttttgaacatctccatttctttcca |
242 |
Q |
| |
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||||||||||||||||||||||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||| ||||| |||||||||||||| ||| |
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| T |
7246548 |
ttccacaggctttcttgaacggtttctacctctgtgcatgtgtctttcacagtactttgagtctggatatgcttcctttgagcatctccatttcttgcca |
7246647 |
T |
|
| Q |
243 |
tctgttcttctacacctccctggctctgggtct |
275 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
7246648 |
tctgttcttctgcacctccctggctctgggtct |
7246680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 200
Target Start/End: Complemental strand, 42092014 - 42091957
Alignment:
| Q |
143 |
ttccacaggctttcttgaacggtttttccctctatgcatgtgcctttcacagtacttt |
200 |
Q |
| |
|
||||||||||||||||||||||||| | || | ||||||||| ||||||||||||||| |
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|
| T |
42092014 |
ttccacaggctttcttgaacggtttctaccacgatgcatgtgtctttcacagtacttt |
42091957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 274
Target Start/End: Complemental strand, 11196821 - 11196771
Alignment:
| Q |
224 |
acatctccatttctttccatctgttcttctacacctccctggctctgggtc |
274 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||| ||||| |||||||| |
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| T |
11196821 |
acatctccattttttaccatctgttcttctacacctacctggttctgggtc |
11196771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 265
Target Start/End: Complemental strand, 4902932 - 4902887
Alignment:
| Q |
220 |
ttgaacatctccatttctttccatctgttcttctacacctccctgg |
265 |
Q |
| |
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|||| |||| ||||||||||||||||||||| |||||||| ||||| |
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| T |
4902932 |
ttgagcatcgccatttctttccatctgttctcctacaccttcctgg |
4902887 |
T |
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