View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10679_low_9 (Length: 270)
Name: NF10679_low_9
Description: NF10679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10679_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 13607999 - 13608244
Alignment:
| Q |
16 |
atgtttgtggaagctggcaagaaagatcctggaaaagactcaactacgaatactccaacaattatatttaagctgcgttgcaatgtaaagtgagactatt |
115 |
Q |
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| T |
13607999 |
atgtttgtggaagctggcaagaaagatcctggaaaagactcaactacgaatactccaacaattatatttaagctgcgttgcaatgtaaagtgagactatt |
13608098 |
T |
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| Q |
116 |
cttaacaacttataacaattatctaatttttcttttcagtttcacagcaagaaacagtgcaaactaactacatcatccttagcaagttagttttggcttt |
215 |
Q |
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| T |
13608099 |
cttaacaacttataacaattatctaatttttcttttcagtttcacagcaagaaacagtgcaaactaactacatcatccttagcaagttagttttggcttt |
13608198 |
T |
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| Q |
216 |
tacaatttcaatggctagtagtagcatccaaactgtctcttcatct |
261 |
Q |
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| T |
13608199 |
tacaatttcaatggctagtagtagcatccaaactgtctcttcatct |
13608244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 17599954 - 17599893
Alignment:
| Q |
197 |
gcaagttagttttggcttttacaatttcaatggctagtagtagcatccaaactgtctcttca |
258 |
Q |
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| T |
17599954 |
gcaagttagctttggcttttataatatcaatggctagtagtagcatccaaagtgtctcttca |
17599893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 14723896 - 14723957
Alignment:
| Q |
197 |
gcaagttagttttggcttttacaatttcaatggctagtagtagcatccaaactgtctcttca |
258 |
Q |
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| T |
14723896 |
gcaagttagctttggcttttataatatcaatggctaatagtagcatccaaagtgtctcttca |
14723957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 153 - 258
Target Start/End: Complemental strand, 6473518 - 6473405
Alignment:
| Q |
153 |
agtttcacagcaagaaacagtgcaaactaactacatcatccttagcaagttagtt--------ttggcttttacaatttcaatggctagtagtagcatcc |
244 |
Q |
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| T |
6473518 |
agtttcatagcaagcaacagtgcaaacaaaatacaaaatccttagcaagttagttttgggcctttggctttaacaatttgaatgactcgtagtagcatcc |
6473419 |
T |
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| Q |
245 |
aaactgtctcttca |
258 |
Q |
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| T |
6473418 |
aaagtgtctcttca |
6473405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 228
Target Start/End: Original strand, 31244142 - 31244186
Alignment:
| Q |
184 |
tacatcatccttagcaagttagttttggcttttacaatttcaatg |
228 |
Q |
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| T |
31244142 |
tacatcatcctcagcaagttagttttggcttttacaattgcaatg |
31244186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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