View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1067_high_1 (Length: 427)
Name: NF1067_high_1
Description: NF1067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1067_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 167 - 330
Target Start/End: Complemental strand, 9441663 - 9441500
Alignment:
| Q |
167 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
266 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
9441663 |
caattgcaactgtccgaccagtattgtcgaccaagtaaaattgacctttaaacacacagatatctacatactttgttgacatgtcagaaatgggtttcca |
9441564 |
T |
|
| Q |
267 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccata |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
9441563 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattccgaaatgccaagaaccata |
9441500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 9442032 - 9441888
Alignment:
| Q |
25 |
catcaggcacatgcttaaaacatttgcgataatcagacgcagacgattgctgacatccatctaagagataaacacagttcccatatatattgaaggtatc |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9442032 |
catcaggcacatgcttaaaacatttgcgataatcagacgcagacgattgctgacttccatctaagagataaacacagttcccatatatattgaaggtatc |
9441933 |
T |
|
| Q |
125 |
atcaataaagacaacacaattccctttagtaacacacatatccaa |
169 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
9441932 |
atcaataaagacaacggaattccctttgacaacacacatatccaa |
9441888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 167 - 330
Target Start/End: Original strand, 9407600 - 9407763
Alignment:
| Q |
167 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
266 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
9407600 |
caattgtaactgtccgaccagttttgtcgaccaagtaaaacctccttttaaacacacaaatatctacatatttagttgacatgtcggaaatgggtttcca |
9407699 |
T |
|
| Q |
267 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccata |
330 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9407700 |
aaatttgttgaggtaacagaacagcataggatgggggaaatattccgaaatgccgagaaccata |
9407763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 167 - 330
Target Start/End: Original strand, 9416807 - 9416970
Alignment:
| Q |
167 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||| |||||||||||||| ||||| |||||||| |
|
|
| T |
9416807 |
caattgtaactgtccgaccagtattgtcgaccaaataaaacctccttttaaacacacaaatatctacatatttagttgacatgtcggaaattggtttcca |
9416906 |
T |
|
| Q |
267 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccata |
330 |
Q |
| |
|
| | |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9416907 |
aaatttgttgagctaacagaacagcataggatgggggaaatattccgaaatgccgagaaccata |
9416970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 167 - 330
Target Start/End: Original strand, 9425807 - 9425970
Alignment:
| Q |
167 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
266 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||| |||| |||||||||||||| |||||||||||||| |
|
|
| T |
9425807 |
caattgtaactgtccgaccagtattgtctaccaagtaaaacctccttttaaacacacaaatatcaacatatttagttgacatgtcggaaatgggtttcca |
9425906 |
T |
|
| Q |
267 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccata |
330 |
Q |
| |
|
| | ||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||| |
|
|
| T |
9425907 |
aaatttgttgaggtaacagaacagcataggatgggggaaatagtccgaaatgccaagaaccata |
9425970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 167 - 329
Target Start/End: Original strand, 9398021 - 9398183
Alignment:
| Q |
167 |
caattgtaactgtccgaccagtattgtcgaccaagtaaaattgtcctttaaacacacagatatctacatgcttagttgacatgtcagaaatgggtttcca |
266 |
Q |
| |
|
|||||| || ||||| |||||||||||| ||||||||||| || |||||||||||| |||| ||||| |||||||||||||| ||||||||||||| |
|
|
| T |
9398021 |
caattgcaattgtcctaccagtattgtcaaccaagtaaaaccttcttttaaacacacaaatatatacatatttagttgacatgtcgaaaatgggtttcca |
9398120 |
T |
|
| Q |
267 |
atagttgttgaggtaacagaacagcatcggatgggggaaatattctgaaatgccgagaaccat |
329 |
Q |
| |
|
|||| |||||||| |||| |||| |||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
9398121 |
atagctgttgagggaacataacaacatcagatgggggaaatattccgaaatgccgagaaccat |
9398183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 9416435 - 9416582
Alignment:
| Q |
25 |
catcaggcacatgcttaaaacatttgcgataatcagacgcagacgattgctgacatccatctaagagataaacacagttcccatatatattgaagg---t |
121 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||| |||||||| |||||| || ||| |||||||||||| ||||| ||| || ||| ||| |
|
|
| T |
9416435 |
catcagacacatagttaaaacatttgcgataatcagacacagacgatagctgacttcgatccaagagataaacatagttctcatgtaacttggaggcatc |
9416534 |
T |
|
| Q |
122 |
atcatcaataaagacaacacaattccctttagtaacacacatatccaa |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9416535 |
atcatcaataaagacaacacaattccctttagtaacacacatatccaa |
9416582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 9397747 - 9397794
Alignment:
| Q |
122 |
atcatcaataaagacaacacaattccctttagtaacacacatatccaa |
169 |
Q |
| |
|
||||||||||||||| |||||||||||||| | |||||||| |||||| |
|
|
| T |
9397747 |
atcatcaataaagacgacacaattccctttggcaacacacaaatccaa |
9397794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 4439816 - 4439867
Alignment:
| Q |
116 |
gaaggtatcatcaataaagacaacacaattccctttagtaacacacatatcc |
167 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| |||||||| |||| |
|
|
| T |
4439816 |
gaaggcatcatcaataaagatgacacaattccctttagaaacacacaaatcc |
4439867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 4428587 - 4428629
Alignment:
| Q |
116 |
gaaggtatcatcaataaagacaacacaattccctttagtaaca |
158 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4428587 |
gaaggcatcatcaataaagatgacacaattccctttagtaaca |
4428629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University