View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10680_high_1 (Length: 258)
Name: NF10680_high_1
Description: NF10680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10680_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 36946892 - 36946661
Alignment:
| Q |
19 |
ctacaatgggcgataatcccttcggcttagcatcattcttagggcaattctctaagattagtttgactgcatcctcgtccccattttcaaccgcaaggta |
118 |
Q |
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| T |
36946892 |
ctacaatgggcgataatcccttcggcttagcatcattcttagggcaattctctaagattagtttgactgcatcctcgtccccattttcaaccgcaaggta |
36946793 |
T |
|
| Q |
119 |
aagtactgatttctttgcatgattaaccatttctaacgcaaattcataacaacaacttgccaatgaattctttaaccagtcttcagttttgtaaagttca |
218 |
Q |
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| T |
36946792 |
aagtactgatttctttgcataattaaccatttctaacgcaaattcataacaacaacttgccaatgaattctttaaccagtcttcagttttgtaaagttca |
36946693 |
T |
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| Q |
219 |
caaacattgaaaatctcatgcccacctttgct |
250 |
Q |
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| T |
36946692 |
caaacattgaaaatctcatgcccaccattgct |
36946661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 36964213 - 36964006
Alignment:
| Q |
27 |
ggcgataatcccttcggcttagcatcattcttagggcaattctctaagattagtttgactgcatcctcgtccccattttcaaccgcaaggtaaagtactg |
126 |
Q |
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| T |
36964213 |
ggcgataatccctccggcttagcatcattcttagggcaattctccaagattagtttgactgcatccttgtccttattttcaaccgcaaggtaaattacag |
36964114 |
T |
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| Q |
127 |
atttctttgcatgattaaccatttctaacgcaaattcataacaacaacttgccaatgaattctttaaccagtcttcagttttgtaaagttcacaaacatt |
226 |
Q |
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| T |
36964113 |
atttccttgcaagattagcaatatctaatgcaaatccataacaacaatctgataatgaattcccgaaccgatctatagtcttgtaaagttcacaaacttt |
36964014 |
T |
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| Q |
227 |
gaaaatct |
234 |
Q |
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|||||||| |
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| T |
36964013 |
gaaaatct |
36964006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 36952758 - 36952596
Alignment:
| Q |
61 |
ggcaattctctaagattagtttgactgcatcctcgtccccattttcaaccgcaaggtaaagtactgatttctttgcatgattaaccatttctaacgcaaa |
160 |
Q |
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|||||||||| |||||||| | |||| ||||||| |||||||| || |||||||| |||||||| |||||||||||||||||||| |||||||||||| | |
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| T |
36952758 |
ggcaattctccaagattagctggactacatcctcttccccattctcgaccgcaagataaagtaccgatttctttgcatgattaacaatttctaacgcata |
36952659 |
T |
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| Q |
161 |
ttcataacaacaacttgccaatgaattctttaaccagtcttcagttttgtaaagttcacaaac |
223 |
Q |
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| T |
36952658 |
ttcataacaacactttgccaatgagttccccaaacaatcttcattttcgtaaagttcacaaac |
36952596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 145
Target Start/End: Original strand, 37081197 - 37081323
Alignment:
| Q |
19 |
ctacaatgggcgataatcccttcggcttagcatcattcttagggcaattctctaagattagtttgactgcatcctcgtccccattttcaaccgcaaggta |
118 |
Q |
| |
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|||||| ||| |||||||| | ||||||||| |||| || |||| |||| | | ||||| ||||||||| |||| ||||||||||||||| |||||||| |
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| T |
37081197 |
ctacaacgggtgataatccttctggcttagcaacattgttggggcgattcgccatgattactttgactgcttccttgtccccattttcaactgcaaggta |
37081296 |
T |
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| Q |
119 |
aagtactgatttctttgcatgattaac |
145 |
Q |
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| T |
37081297 |
aagtattgattgttttgcatggttaac |
37081323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 72 - 233
Target Start/End: Original strand, 12495288 - 12495449
Alignment:
| Q |
72 |
aagattagtttgactgcatcctcgtccccattttcaaccgcaaggtaaagtactgatttctttgcatgattaaccatttctaacgcaaattcataacaac |
171 |
Q |
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|||||||||| ||||||||||| |||||| ||| |||| |||||| ||||||| |||| |||||||||||||| || ||||| ||||||||||||||| |
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| T |
12495288 |
aagattagttcgactgcatccttgtccccttttacaacagcaaggaaaagtaccgattcctttgcatgattaataatatctaatgcaaattcataacaag |
12495387 |
T |
|
| Q |
172 |
aacttgccaatgaattctttaaccagtcttcagttttgtaaagttcacaaacattgaaaatc |
233 |
Q |
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|| |||||||||| | || | |||||||||||||||||||||||||| ||||||||| |
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| T |
12495388 |
aatttgccaatgagtatccagacaaatcttcagttttgtaaagttcacaaactttgaaaatc |
12495449 |
T |
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