View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10680_high_3 (Length: 240)

Name: NF10680_high_3
Description: NF10680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10680_high_3
NF10680_high_3
[»] chr1 (3 HSPs)
chr1 (67-240)||(48658944-48659114)
chr1 (24-116)||(48626155-48626247)
chr1 (179-240)||(48626300-48626361)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 48658944 - 48659114
Alignment:
Q  67 tgcttatattttgtacggcatgctatatcttaccaaagaccttatatcttctttacaaacataagttactagttagtagttagcaactgccttcaattcc 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||    
T  48658944 tgcttatattttgtacggcatgctatatcttaccaaagaccttatatctt---tacaaacataagttactagttagtagttagcaactgccttcaattcc 48659040  T
Q  167 tggttgatatatcagcagatgggtggaataaaattctgtcactcatcaaatatatcgaataatttcaaagagac 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48659041 tggttgatatatcagcagatgggtggaataaaattctgtcactcatcaaatatatcgaataatttcaaagagac 48659114  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 116
Target Start/End: Original strand, 48626155 - 48626247
Alignment:
Q  24 ttacctaaaaatactcttggtaaatatattccactatcagcagtgcttatattttgtacggcatgctatatcttaccaaagaccttatatctt 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||    
T  48626155 ttacataaaaatactcttggtaaatatattccactatcagcagtgcttatgttgtgtatggcatgctatatcttaccaaagaccttatatctt 48626247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 48626300 - 48626361
Alignment:
Q  179 cagcagatgggtggaataaaattctgtcactcatcaaatatatcgaataatttcaaagagac 240  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48626300 cagcagatgggtggaataaaattcggtcactcatcaaatatatcgaataatttcaaagagac 48626361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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