View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10680_low_1 (Length: 407)
Name: NF10680_low_1
Description: NF10680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10680_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 97 - 246
Target Start/End: Complemental strand, 33750490 - 33750341
Alignment:
| Q |
97 |
aactaaaatttgttacaaaacaagacaacttttgaaagggtagaaagaaagagttgaaagttgcactataataaaccctctgaaagtaaaaaggttccct |
196 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750490 |
aactaaaatttgttataaaacaagacaacttttgaaagggtagaaagaaagagttgaaagttgcactataataaaccctctgaaagtaaaaaggttccct |
33750391 |
T |
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| Q |
197 |
gcaaaaagcacaaagaacatgaggcatcaaaaacacacacacaatagtaa |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33750390 |
gcaaaaagcacaaagaacatgaggcatcaaaaacacacacacattagtaa |
33750341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 33750566 - 33750513
Alignment:
| Q |
15 |
cagaaacagaaacagaggaagaatcaaacgtgtgagagtaaaaaacaaagaaag |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33750566 |
cagaaacagaaacagaggaagaatcaaacgtgtgagagtaaaaaacaaagaaag |
33750513 |
T |
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