View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10680_low_10 (Length: 238)
Name: NF10680_low_10
Description: NF10680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10680_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 51 - 223
Target Start/End: Original strand, 2330770 - 2330942
Alignment:
| Q |
51 |
tgtatatgcttgagcaggtggatcattggtgttggagagaaatgatagcttggaagacagaaaaatggtgatagggtcaaagcctcctgcttgtttaaat |
150 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2330770 |
tgtatatggttgagcaggtggatcattggtgttggagagaaatgatagcttgcaagacagaaaaatggtgatagggtcaaagcctcctgcttgtttaaat |
2330869 |
T |
|
| Q |
151 |
aagtgcatgaattgtaggccttgtatagcaactttggttgtttcacaaaaacgaaagagttacaaagtgttat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2330870 |
aagtgcatgaattgtaggccttgtatagcaactttggttgtttcacaaaaacgaaagagttacaaagtgttat |
2330942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 2330736 - 2330775
Alignment:
| Q |
2 |
ttaatagcagtatgatcttaaatctttcttctcatgtata |
41 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2330736 |
ttaatagcattatgatcttaaatctttcttctcatgtata |
2330775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University