View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10680_low_3 (Length: 267)
Name: NF10680_low_3
Description: NF10680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10680_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 39841524 - 39841762
Alignment:
| Q |
12 |
gaacctgtgtccggataggggttgcgggttggtggagatccgctggacagtgacttttgtctcttattaatcttttcagcaatgggtgatgcactgtaca |
111 |
Q |
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| T |
39841524 |
gaacctttgtccagataggggttgcggggtggtggagatccgctggacagtgacttttgtctcttattaatcttttcagcaatgggtgatgaactgtaca |
39841623 |
T |
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| Q |
112 |
ggcttgatgcttgggctgtgaatata-attctttgtcttagaaggaatattatgtagtctaccattttgcactcagctactttaccatttcatgtgaata |
210 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
39841624 |
ggcctgatgcttgggctgtgaatatatattctttgtcttagaaggaatattatttagtctaccattttgcactcagctacttta-catttcatgtgaata |
39841722 |
T |
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| Q |
211 |
tcaattgagttttttgttcaacgaaaaaggggataaggct |
250 |
Q |
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| T |
39841723 |
tcaattgagttttttgttcaacgaaaaaggggataaggct |
39841762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 35163393 - 35163633
Alignment:
| Q |
12 |
gaacctgtgtccggataggggttgc-gggttggtggagatccgctggacagtgacttttgtctcttattaatcttttcagcaatgggtgatgcactgtac |
110 |
Q |
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| T |
35163393 |
gaacctttatccggataggggttgccggggtggtggagatccgctggacagtgacttttgtctcttattaatcttttcagcaatgggtgatgcactgtac |
35163492 |
T |
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| Q |
111 |
aggcttgatgcttgggctgtga--atataattctttgtcttagaaggaatattatgtagtctaccattttgcactcagctactttaccatttcatgtgaa |
208 |
Q |
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| T |
35163493 |
aggcttgatgcttgggctgtgaatatataattctttgtcttagaaggaatattatgtagtctaccattttgcacttagctacttta-catttcatgtgaa |
35163591 |
T |
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| Q |
209 |
tatcaattgagttttttgttcaacgaaaaaggggataaggct |
250 |
Q |
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| T |
35163592 |
tatcaattgagttttttgttcaacgaaaaaggggataaggct |
35163633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 39846576 - 39846815
Alignment:
| Q |
12 |
gaacctgtgtccggataggggttgcgggttggtggagatccgctggacagtgacttttgtctcttattaatcttttcagcaatgggtgatgcactgtaca |
111 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39846576 |
gaacctttgtccggataggggttgcggggtggtggagatccgctggacagtgacttttgtctcttattaatcttttcagcaatgggtgatgaactgtaca |
39846675 |
T |
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| Q |
112 |
ggcttgatgcttgggctgtga--atataattctttgtcttagaaggaatattatgtagtctaccattttgcactcagctactttaccatttcatgtgaat |
209 |
Q |
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||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
39846676 |
ggcctgatgcttgggctgtgaatatataattctctgtcttagaaggaatattatgtagtctaccattttgcactcagctacttta-catttcgtgtgaat |
39846774 |
T |
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| Q |
210 |
atcaattgagttttttgttcaacgaaaaaggggataaggct |
250 |
Q |
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| T |
39846775 |
atcaattgagttttttgttcaacgaaaaaggggataaggct |
39846815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 44796789 - 44796550
Alignment:
| Q |
12 |
gaacctgtgtccggataggggttgcgggttggtggagatccgctggacagtgacttttgtctcttattaatcttttcagcaatgggtgatgcactgtaca |
111 |
Q |
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|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
44796789 |
gaacctttgtccggataggggttgcggggtggtggagatccgctggacagtgacttttgtctcttattaatcttttcagcaatgggtgatgaattgtaca |
44796690 |
T |
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| Q |
112 |
ggcttgatgcttgggctgtgaa--tataattctttgtcttagaaggaatattatgtagtctaccattttgcactcagctactttaccatttcatgtgaat |
209 |
Q |
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|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
44796689 |
ggcttgatgcttgggctgtgaatatataattctctgtcttagaaggaatattatgtagtctaccattttgcactcagctacttta-catttcatttgaat |
44796591 |
T |
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| Q |
210 |
atcaattgagttttttgttcaacgaaaaaggggataaggct |
250 |
Q |
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| T |
44796590 |
atcaattgagttttttgttcaacgaaaaaggggataaggct |
44796550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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