View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10680_low_5 (Length: 253)
Name: NF10680_low_5
Description: NF10680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10680_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 241
Target Start/End: Complemental strand, 21975615 - 21975382
Alignment:
| Q |
4 |
ggagtagcataggcaacatattcccaaggtatcttgataatattcttattagtattcataatgataataatgataagttagttgagttttaattt-tatt |
102 |
Q |
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| T |
21975615 |
ggagcagcaaaggcaacatatttccaaggtatcttgattatgttattattagtattcataatattcataatgatga------tgagttttaatttgtatt |
21975522 |
T |
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| Q |
103 |
tt-cttttcctgaataaagcttgggagacaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaaccctaaattat |
201 |
Q |
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| T |
21975521 |
tttctattcatgaataaagcttgggatgcaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaacccaaaattat |
21975422 |
T |
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| Q |
202 |
ggtgtaagcatgccttctcctactatcccaagtgtgatgt |
241 |
Q |
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| T |
21975421 |
ggtgtaagcatgccttctcctattatcccaagtgtgatgt |
21975382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 44478563 - 44478796
Alignment:
| Q |
4 |
ggagtagcataggcaacatattcccaaggtatcttgataatattcttattagtattcataatgataataatgataagttagttgagttttaattt-tatt |
102 |
Q |
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| T |
44478563 |
ggagcagcaaaggcaacatatttccaaggtatcttgattattttattattggtattcataatattcataatgatga------tgagttttaatttgtatt |
44478656 |
T |
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| Q |
103 |
tt-cttttcctgaataaagcttgggagacaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaaccctaaattat |
201 |
Q |
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| T |
44478657 |
tttctattcatgaataaagcttgggatgcaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggctgagaggtcacaacccaaaattat |
44478756 |
T |
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| Q |
202 |
ggtgtaagcatgccttctcctactatcccaagtgtgatgt |
241 |
Q |
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| T |
44478757 |
ggtgtaagcatgccttctcctattatcccaagtgtgatgt |
44478796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 41770989 - 41770940
Alignment:
| Q |
192 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgt |
241 |
Q |
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| T |
41770989 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgt |
41770940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 47735733 - 47735782
Alignment:
| Q |
192 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgt |
241 |
Q |
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| T |
47735733 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgt |
47735782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 13649461 - 13649412
Alignment:
| Q |
192 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgt |
241 |
Q |
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| T |
13649461 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgt |
13649412 |
T |
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