View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10680_low_6 (Length: 249)
Name: NF10680_low_6
Description: NF10680
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10680_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31363131 - 31362891
Alignment:
| Q |
1 |
tcgtgtctaactcatccgtaaaccgagaggtgtcactctcaccgatcagtgtttttacatgcattgaggacttgctcttgccacttgaattaaaaataca |
100 |
Q |
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| T |
31363131 |
tcgtgtccaactcatccgtaaaccgagaggtgtcactcttaccgataagtgtttttacatgcattgaggacttgctcttgccacttaaattaaaaataca |
31363032 |
T |
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| Q |
101 |
tgctatatatatat------tgagactctctaccgctaagttattgatatatctgaacttctctcttccttgttaataattttaagataagatggtcaca |
194 |
Q |
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| T |
31363031 |
tgctatatatatatatatattgagactctctactgctaagttattgatatatctgaacttctctcttccttgttaataattttaagataagatggccaca |
31362932 |
T |
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| Q |
195 |
tccactcaatgtttcttcctttcactcattctcatttggtt |
235 |
Q |
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| T |
31362931 |
tccactcaatgtttcttcctttcactcattctcatttggtt |
31362891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 234
Target Start/End: Complemental strand, 31295394 - 31295328
Alignment:
| Q |
168 |
taataattttaagataagatggtcacatccactcaatgtttcttcctttcactcattctcatttggt |
234 |
Q |
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| T |
31295394 |
taataattttaagataagatggctagatccactcaatttttcttcctttcattcattctcatttggt |
31295328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 238
Target Start/End: Complemental strand, 31258233 - 31258136
Alignment:
| Q |
141 |
atatatctgaacttctctcttccttgttaataattttaagataagatggtcacatccactcaatgtttcttcctttcactcattctcatttggttcat |
238 |
Q |
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| T |
31258233 |
atatacctgcacttctcttttccttgttaatcattttaagataagatgaacacttcatctcaatttctcttcctttcactcattataatttggttcat |
31258136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 31377099 - 31376989
Alignment:
| Q |
121 |
tctctaccgctaagttattgatatatctgaact-tctctcttccttgttaataattttaagataagatggtcacatccactcaatgtttcttcctttcac |
219 |
Q |
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| T |
31377099 |
tctctacccctaaattattgatatatctgaactctctcttttccttg---atagttttaagatga-at----acttcctctcattttttcttcctttccc |
31377008 |
T |
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| Q |
220 |
tcattctcatttggttcat |
238 |
Q |
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| T |
31377007 |
tcattctcatttggttcat |
31376989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 31310675 - 31310629
Alignment:
| Q |
136 |
tattgatatatctgaacttctctcttccttgttaataattttaagat |
182 |
Q |
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| T |
31310675 |
tattgatatatctaaacttatcttttccttgttaataattctaagat |
31310629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 31389352 - 31389299
Alignment:
| Q |
106 |
tatatatattgagactctctaccgctaagttattgat--atatctgaacttctc |
157 |
Q |
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| T |
31389352 |
tatatatattgagacagtctacctctaagttattgatatatatctgaacttctc |
31389299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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