View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_high_1 (Length: 412)
Name: NF10681_high_1
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 376
Target Start/End: Original strand, 45062757 - 45063104
Alignment:
| Q |
6 |
atttatgaggtgtgaccttcaaggtaataaaatgagaatatatgtcaaattatgtgaccaagatcataattaaatttatcttaggtcataaataatttca |
105 |
Q |
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| T |
45062757 |
atttatgaggtgtgaccttcaaggtaataaaatgagaatatatgtgaaattatgtgaccaagatcataattaaatttatcttaggtcataaataatttca |
45062856 |
T |
|
| Q |
106 |
gtgataatatatattgatcgtacttatttaattttatttgtggtaaaggttgctctctattaatgaaattgacttctaaatattatgttatagattatca |
205 |
Q |
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| T |
45062857 |
gtgataatatatattgatcgtacttatttaatttaatttgtggtaaagattgctctctattaatgaatttgacttct----------------------a |
45062934 |
T |
|
| Q |
206 |
ggtagaaggggcaacagttcttgcagccagagtgtagacctttttataagtgaatgctttcttaagggacaatgtaattaaatggcttgggatattcatg |
305 |
Q |
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| T |
45062935 |
ggtagaaggggcaacagttcttgcagccagagtgtagacctttttatgagtgaatgttttattaagggacaatgtaattaaatggctagggatattcatg |
45063034 |
T |
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| Q |
306 |
cttttttagccttgagatattctctatttaagcaaaaacattgtccacacaactcctttttaccgcacttt |
376 |
Q |
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| T |
45063035 |
cttttttagccttgagatattctctatttaagc-aaaacgttgtccacacaactcctttttaccgcacttt |
45063104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 71 - 293
Target Start/End: Complemental strand, 48491327 - 48491109
Alignment:
| Q |
71 |
ataattaaatttatcttaggtcataaataatttcagtgata-atatatattgatcgtacttatttaattttatttgtggtaaaggttgctctctattaat |
169 |
Q |
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| T |
48491327 |
ataattaaatttcccttgggtaacaaataatatcagtgatacatctatactgatagtacttatttaattt-----gtggttaatgttgttctatcttaat |
48491233 |
T |
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| Q |
170 |
gaaattgacttctaaatattatgttatagattatcaggtagaaggggcaacagttcttgcagccagagtgtagacctttttataagtgaatgctttctta |
269 |
Q |
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||| ||||||||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
48491232 |
gaatttgacttctaaatattaagttactgattttcaggttgaaggggcaacagttcttgcagccagagagtagacctttttatgagtgaatgctttctaa |
48491133 |
T |
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| Q |
270 |
agggacaatgtaattaaatggctt |
293 |
Q |
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| T |
48491132 |
aggggctatgtaattaaatggctt |
48491109 |
T |
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