View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_high_7 (Length: 239)
Name: NF10681_high_7
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37626947 - 37627169
Alignment:
| Q |
1 |
aaatgatgtatgccaagaatgcaacaatttccctgagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggactt |
100 |
Q |
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| T |
37626947 |
aaatgatgtatgccaagaatgcaacaatttcccttagaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggactt |
37627046 |
T |
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| Q |
101 |
attgaaagactaagttttgcaagagataggccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaac |
200 |
Q |
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| T |
37627047 |
attgaaagactaagttttgcaagagatagaccaacagagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaac |
37627146 |
T |
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| Q |
201 |
ttacaaaaaccatttgcattttg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
37627147 |
ttacaaaaaccatttgcattttg |
37627169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 37618569 - 37618755
Alignment:
| Q |
36 |
agaaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagataggccaac |
135 |
Q |
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||||||||||||||| |||||| |||||| ||||| ||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||| ||||| |
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| T |
37618569 |
agaaatgctacatttcataactagtttatttgattt-gtttaggtggtggaaagagttgggacttgttgaaaaacttggttttgcaagagatagaccaac |
37618667 |
T |
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| Q |
136 |
agagtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttg |
223 |
Q |
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| T |
37618668 |
agagtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgcatagaacttacaaaaaccatatgtattttg |
37618755 |
T |
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