View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_low_12 (Length: 252)
Name: NF10681_low_12
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 53982371 - 53982610
Alignment:
| Q |
11 |
agcaaaggtataaataacaatttagtttgtttttaagaaaaaagactaaattgtaatattcaattgttgattgaggtaaaagctagttttgctcctctaa |
110 |
Q |
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| T |
53982371 |
agcataggtataaataacaatttagtttgtttttaagaaaaaagactaaattgtaatattcaattgttgattgaggtaaaagctagttttgctcctctaa |
53982470 |
T |
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| Q |
111 |
atttttggatgaaccaaatataaatccttatgaagaacatatctaattcttatgatggatctgcaattaattttatcacacatcctgaatttgacaattt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53982471 |
atttttggatgaaccaaatataaatccttatgaagaac--atctaattcttatgatggatctgcaattaattttatcacacatcctgaatttgacaattt |
53982568 |
T |
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| Q |
211 |
tttatcccacttctcatctaaaactccattttatatgttttc |
252 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53982569 |
tttatcccacttctcatctaaaattccattttatatgttttc |
53982610 |
T |
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