View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_low_18 (Length: 230)
Name: NF10681_low_18
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 35982701 - 35982900
Alignment:
| Q |
15 |
atgaagactgaagagccaaaagaaaaatgcaccatcttgtggtgactgaagaagttaacaaaatttctgtttactgtatgccagaattgctaatgtactt |
114 |
Q |
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| T |
35982701 |
atgaagactgaagagccaaaagaaaaatgcaccatcttgtggtgactgaagaagttaacaaaatttctgtttactgtatgccagaattgctaatgtactt |
35982800 |
T |
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| Q |
115 |
tgtgatcatcactgcacgaatcttattctttgctatcaataaagaattctagctttatcaaacaagtgatgcattgataaactatgcatgtagttttata |
214 |
Q |
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| T |
35982801 |
tgtgatcatcactgcacgaatcttattctttgctatcaataaagaattctagctttatcaaaaaagtgatgcattgataaactatgcatgtagttttata |
35982900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 35998249 - 35998313
Alignment:
| Q |
116 |
gtgatcatcactgcacgaatcttattctttgctatcaataaagaattctagctttatcaaacaag |
180 |
Q |
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| T |
35998249 |
gtgagcattactgcagaaatcttattctttccttttaataaagaattctagctttatcaaacaag |
35998313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 180
Target Start/End: Original strand, 35993484 - 35993538
Alignment:
| Q |
126 |
ctgcacgaatcttattctttgctatcaataaagaattctagctttatcaaacaag |
180 |
Q |
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| T |
35993484 |
ctgcacaaatcttactctttccttttaataaagaattatagctttatcaaacaag |
35993538 |
T |
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