View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_low_2 (Length: 410)
Name: NF10681_low_2
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 8921574 - 8921168
Alignment:
| Q |
17 |
aagaaccacacctcatcttttgcaccggtgttagtattttcttcccaaataggacactcattttgatagtg------------acacttatagtattcca |
104 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||| |||||||||||| ||||||||||||||||| |
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| T |
8921574 |
aagaaccacacctcatcttttgcaccggtgttagcattttcttcccaagtgggacacttattttgatagtgtcccaacttgtgacacttatagtattcca |
8921475 |
T |
|
| Q |
105 |
ccatctctttgctttgtcttcctcttccccttcccctt------------gctccatttcttcctctaccatgagtaaaaccaccatcttcagttcttcc |
192 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
8921474 |
ccatctctttgctttgtcttcatcttccccttccccttccccttccacttgctccatttcttcctctaccatgagtaaaaccaccatctccagctcttcc |
8921375 |
T |
|
| Q |
193 |
tcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgcttcttggacaagaaaattgctttgcagttcatta |
292 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
8921374 |
tcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcatgcttcttgaacaagaaaattgctttgcagttcatta |
8921275 |
T |
|
| Q |
293 |
atggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggacctaagaatcttctccaccatagttgttt |
392 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
8921274 |
atggaaaaagcggtaacatcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatggacctaagaatcttctccaccatagtttttt |
8921175 |
T |
|
| Q |
393 |
ttccttt |
399 |
Q |
| |
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||||||| |
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| T |
8921174 |
ttccttt |
8921168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 159 - 399
Target Start/End: Original strand, 7627363 - 7627603
Alignment:
| Q |
159 |
taccatgagtaaaaccaccatcttcagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgc |
258 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627363 |
taccatgagtaaaaccaccatctccagttcttcctcttcttgaatttgacaccttcaagagttgttcttcttcctttttcttgtgaagtgtcattcttgc |
7627462 |
T |
|
| Q |
259 |
ttcttggacaagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtc |
358 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627463 |
ttcttgaacaagaaaattgctttgcagttcattaatggaaaaagtggtaaggtcattggattcttctatggagcaaaccacatagttgaatcttgaagtc |
7627562 |
T |
|
| Q |
359 |
atggacctaagaatcttctccaccatagttgtttttccttt |
399 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7627563 |
atggacctaagaatcttctccaccatagttgtttttccttt |
7627603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 7622020 - 7622157
Alignment:
| Q |
17 |
aagaaccacacctcatcttttgcaccggtgttagtattttcttcccaaataggacactcattttgata------------gtgacacttatagtattcca |
104 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||||||||| |||| |
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| T |
7622020 |
aagaaccacaccttatcttttgcaccggtgttagcattttcttcccaagtaggacacccattttgatagtgtcccaacttgtgacacttatagtactcca |
7622119 |
T |
|
| Q |
105 |
ccatctctttgctttgtcttcctcttccccttcccctt |
142 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
7622120 |
ccatctcttttctttgtcttcctcttccccttcccctt |
7622157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 363
Target Start/End: Complemental strand, 11356846 - 11356770
Alignment:
| Q |
287 |
tcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatgga |
363 |
Q |
| |
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|||| |||||| ||| | ||||| |||||||||||||||||| ||| |||| ||||| ||||||| | |||||||| |
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| T |
11356846 |
tcatcaatggataaaattgtaacatcattggattcttctatgacgcacaccaaatagtcgaatctttatgtcatgga |
11356770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 249 - 378
Target Start/End: Original strand, 35372092 - 35372221
Alignment:
| Q |
249 |
tcattcttgcttcttggacaagaaaattgctttgcagttcattaatggaaaaagtggtaacgtcattggattcttctatggagcaaaccacatagttgaa |
348 |
Q |
| |
|
|||||||||||||||| ||||| || ||| ||||||||||| ||| |||| ||||||||| ||||| ||||||||||| | || |||||||||||||| |
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| T |
35372092 |
tcattcttgcttcttgcacaagtaatctgcattgcagttcatcaatagaaagagtggtaacatcattagattcttctatagtacacaccacatagttgaa |
35372191 |
T |
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| Q |
349 |
tcttgaagtcatggacctaagaatcttctc |
378 |
Q |
| |
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|||||| |||||||| |||| ||||||||| |
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| T |
35372192 |
tcttgatgtcatggatctaaaaatcttctc |
35372221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 24659053 - 24659113
Alignment:
| Q |
318 |
attcttctatggagcaaaccacatagttgaatcttgaagtcatggacctaagaatcttctc |
378 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||| |||||||| | ||||||||||| |
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|
| T |
24659053 |
attcttctatagagtagaccacatagttgaatcttgatgtcatggatatgagaatcttctc |
24659113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 363
Target Start/End: Original strand, 10784303 - 10784361
Alignment:
| Q |
305 |
gtaacgtcattggattcttctatggagcaaaccacatagttgaatcttgaagtcatgga |
363 |
Q |
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||||| ||||| |||||||| || |||||||| ||||| ||||||||||| |||||||| |
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| T |
10784303 |
gtaacatcatttgattcttcaattgagcaaacaacataattgaatcttgatgtcatgga |
10784361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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