View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_low_20 (Length: 221)
Name: NF10681_low_20
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 38005485 - 38005691
Alignment:
| Q |
1 |
ttcgtcttcatcttcaaaattcttatacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgc |
100 |
Q |
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| T |
38005485 |
ttcgtcttcatcttcaaaattcttatacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgc |
38005584 |
T |
|
| Q |
101 |
gagattttgttgtaaaacaactcgaatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaa |
200 |
Q |
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| T |
38005585 |
gagattttgttgtaaaacaactcaaatgcaatgccgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaa |
38005684 |
T |
|
| Q |
201 |
ctatgtt |
207 |
Q |
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| ||||| |
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| T |
38005685 |
cgatgtt |
38005691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 26462324 - 26462122
Alignment:
| Q |
5 |
tcttcatcttcaaaattcttatacatgtcaccatcttcaccagcccaaatcttacaaaacttacaaaaatcaatttttggtgcaactggcatttgcgaga |
104 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| || | |
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| T |
26462324 |
tcttcatcttcgaaattcttatacatgtcaccatcttcaccagcccaaatcttacaaaagttacaaaaatcaatttttggtgaaacaggcatttcagata |
26462225 |
T |
|
| Q |
105 |
ttttgttgtaaaacaactcgaatgcaatgctgacgattcgagctcttcgtgttgatcgaacagtgccgtgtggctcaagcgaaggtgataaaacaactat |
204 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
26462224 |
ttttgctgtaaaacaactcgaatgcaatgcctacgattcgagctcttcgtgttgaccgaacagtgccgtgtggctcaagcgaaggcgataaaacaacgat |
26462125 |
T |
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| Q |
205 |
gtt |
207 |
Q |
| |
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||| |
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| T |
26462124 |
gtt |
26462122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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