View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10681_low_4 (Length: 332)
Name: NF10681_low_4
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 35311578 - 35311272
Alignment:
| Q |
1 |
aagatgatttggttaggagttacagtaccaatgaggctgctttttctacagactttgctgctgctatggtgaaactgagtaaaatcagtcctctcactgg |
100 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35311578 |
aagataatttggttaggagttatagtaccaatgaggctgctttttctacagactttgctgctgctatggtgaaactgagtaaaatcagtcctctcactgg |
35311479 |
T |
|
| Q |
101 |
gactaatggggagatcagaaagaattgcaggcttgtgaattgatattgaatattggagggcttataagcaattaaataaacaatgtggtgacttgatctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35311478 |
gactaatggggagatcagaaagaattgtaggcttgtgaattgatattgaatattggagggcttataagcaattaaataaacaatgtggtgacttgatctt |
35311379 |
T |
|
| Q |
201 |
agacacattgataatagtagtattgtttgttgcgttatcattttggataatttgaatgtttgtattttcacaaatactccctccttcacaaaatgtaaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35311378 |
agacacattgataatagtagtattgtttgttgcgttatcattttggataatttgaatgtttgtattttcacaaatactccctccttcacaaaatgtaaga |
35311279 |
T |
|
| Q |
301 |
aaaaatt |
307 |
Q |
| |
|
||||||| |
|
|
| T |
35311278 |
aaaaatt |
35311272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 35307235 - 35307058
Alignment:
| Q |
1 |
aagatgatttggttaggagttacagtaccaatgaggctgctttttctacagactttgctgctgctatggtgaaactgagtaaaatcagtcctctcactgg |
100 |
Q |
| |
|
||||| |||||||||||||||| |||||||||| ||| ||||||||| ||||||||| | |||||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
35307235 |
aagataatttggttaggagttatagtaccaatggtgctactttttctagagactttgccgttgctatggtgaaactgagtaaaattagtcctctaactgg |
35307136 |
T |
|
| Q |
101 |
gactaatggggagatcagaaagaattgcaggcttgtgaattgatattgaatattggagggcttataagcaattaaataaa |
180 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
35307135 |
gactaatggggagattagaaagaattgcaggcttgtgaattgatcttga--attggagggcttataagcaattaaataaa |
35307058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 35322236 - 35322059
Alignment:
| Q |
1 |
aagatgatttggttaggagttacagtaccaatgaggctgctttttctacagactttgctgctgctatggtgaaactgagtaaaatcagtcctctcactgg |
100 |
Q |
| |
|
||||| |||||||||||||||| |||||||||| ||| ||||| | ||||||||||| |||||||||||||||||||||||| | |||||| ||||| |
|
|
| T |
35322236 |
aagataatttggttaggagttatagtaccaatggtgctacttttagaagagactttgctgttgctatggtgaaactgagtaaaattaatcctctaactgg |
35322137 |
T |
|
| Q |
101 |
gactaatggggagatcagaaagaattgcaggcttgtgaattgatattgaatattggagggcttataagcaattaaataaa |
180 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||| |||| |||||||||||||||||||||| |||||| |
|
|
| T |
35322136 |
gactaatggggagattagaaagaattgtaggcttgtgaattgatcttga--attggagggcttataagcaattgaataaa |
35322059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 35275287 - 35275179
Alignment:
| Q |
36 |
gctgctttttctacagactttgctgctgctatggtgaaactgagtaaaatcagtcctctcactgggactaatggggagatcagaaagaattgcaggcttg |
135 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
35275287 |
gctgctttttctagagactttgctgctgctatggtgaagatgagtaaaattagtcctcttactgggactaatggtgagatcagaaagaattgcaggattg |
35275188 |
T |
|
| Q |
136 |
tgaattgat |
144 |
Q |
| |
|
||||||||| |
|
|
| T |
35275187 |
tgaattgat |
35275179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 35289385 - 35289296
Alignment:
| Q |
50 |
agactttgctgctgctatggtgaaactgagtaaaatcagtcctctcactgggactaatggggagatcagaaagaattgcaggcttgtgaa |
139 |
Q |
| |
|
||||||||| |||||||||||||| |||||| ||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
35289385 |
agactttgcagctgctatggtgaagatgagtagaattagtcctctaactgggactaatggggagattagaaagaattgcaggcttgtgaa |
35289296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 35280040 - 35279949
Alignment:
| Q |
50 |
agactttgctgctgctatggtgaaactgagtaaaatcagtcctctcactgggactaatggggagatcagaaagaattgcaggcttgtgaatt |
141 |
Q |
| |
|
|||||||||| |||||||||||| |||| | ||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||| |
|
|
| T |
35280040 |
agactttgcttttgctatggtgaagatgagcagaattagtcctctcacagggactaatggggaaattagaaagaattgcagacttgtgaatt |
35279949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 189 - 277
Target Start/End: Complemental strand, 35307012 - 35306925
Alignment:
| Q |
189 |
tgacttgatcttagacacattgataatagtagtattgtttgttgcgttatcattttggataatttgaatgtttgtattttcacaaatac |
277 |
Q |
| |
|
||||| |||||| ||||||||| ||| ||||||||||| ||| | || ||||||| ||||||||||||||||||| || ||||||||| |
|
|
| T |
35307012 |
tgactagatcttggacacattggcaattgtagtattgtt-gttactttttcatttttgataatttgaatgtttgtagttccacaaatac |
35306925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 10459252 - 10459298
Alignment:
| Q |
270 |
acaaatactccctccttcacaaaatgtaagaaaaaattggtcaacaa |
316 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
10459252 |
acaaatactccctccttcccaaaatataagcaaaaattggtcaacaa |
10459298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 34252706 - 34252749
Alignment:
| Q |
273 |
aatactccctccttcacaaaatgtaagaaaaaattggtcaacaa |
316 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
34252706 |
aatactccctccgtcccaaaatgtaagcaaaaattggtcaacaa |
34252749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 315
Target Start/End: Original strand, 9675753 - 9675793
Alignment:
| Q |
275 |
tactccctccttcacaaaatgtaagaaaaaattggtcaaca |
315 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||||| |
|
|
| T |
9675753 |
tactccctccgtctcaaaatgtaagcaaaaattggtcaaca |
9675793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University