View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_low_5 (Length: 329)
Name: NF10681_low_5
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 318
Target Start/End: Complemental strand, 15079810 - 15079492
Alignment:
| Q |
19 |
ctgcagtggtcttcgtattgagtgaaatcttgaagatagcataataacaaagactcccctttattcaaatagtaaacaaatttagtcacttttttccatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
15079810 |
ctgcagtggtcttcgtattgagtgaaatcttgaagatagcatgataacaatgacttccctatattgaaatagtaaacaaatttagtcacttttttccatt |
15079711 |
T |
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| Q |
119 |
caatttttaaatttatattgacacaaactaaacagttcagctgaattcgttttgtatgt-------------------gatcagatcagactgtatcagt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
15079710 |
caatttttaaatttatattgacacaaactaaacagttcagctgaattcgttttgtatgttcagtttcgttttgtatgtgatcagatcagactgtatcagt |
15079611 |
T |
|
| Q |
200 |
tcacaagtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcccatgtgattgctaaccacctctact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
15079610 |
tcacaagtcttgagcattactaatccatgcattgccaatgaactatcacataaggctttcattccaccaaattcccatgtgatcgctaaccacctctact |
15079511 |
T |
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| Q |
300 |
tcagctttagaaggttcat |
318 |
Q |
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||||||||||||||||||| |
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| T |
15079510 |
tcagctttagaaggttcat |
15079492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 15166438 - 15166753
Alignment:
| Q |
19 |
ctgcagtggtcttcgtattgagtgaaatcttgaagatagcataataacaaagactcccctttattcaaatagtaaacaaatttagtcacttttttccatt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15166438 |
ctgcagtggtcttcgtattgagtgaaatcttgaagatagcataataacaatgacttccctatattcaaatagtaaacaaatttagtcacttttttccatt |
15166537 |
T |
|
| Q |
119 |
caatttttaaatttatattgacacaaactaaacagttcagctgaa-------------------ttcgttttgtatgtgatcagatcagactgtatcagt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15166538 |
caatttttaaatttatattgacacaaactaaacagttcagctgaattcgttttgtatgttcagtttcgttttgtatgtgatcagatcagactgtatcagt |
15166637 |
T |
|
| Q |
200 |
tcacaagtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcccatgtgattgctaaccacctctact |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15166638 |
tcacaagtcttgagcattactaatccatgcattgccaatgaactatcacataaggctttcattccaccaaattcccatgtgattgctaaccacctcta-- |
15166735 |
T |
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| Q |
300 |
tcagctttagaaggttcat |
318 |
Q |
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|||||||||||||||||| |
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| T |
15166736 |
-cagctttagaaggttcat |
15166753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 175 - 318
Target Start/End: Original strand, 15162041 - 15162176
Alignment:
| Q |
175 |
tgtgatcagatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcc |
274 |
Q |
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||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| | |||||||||||| ||||||||||||| |
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| T |
15162041 |
tgtgatcagatcagactgtatcagttcacaagttttaag--------atccatgcattgccaatgaactatcacataaggctttcagtccaccaaattcc |
15162132 |
T |
|
| Q |
275 |
catgtgattgctaaccacctctacttcagctttagaaggttcat |
318 |
Q |
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| T |
15162133 |
catgtgatcgctaaccacctctacttcagctttagaaggttcat |
15162176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 15160208 - 15160303
Alignment:
| Q |
82 |
ttcaaatagtaaacaaatttagtcacttttttccattcaatttttaaatttatattgacacaaactaaacagttcagctgaattcgttttgtatgt |
177 |
Q |
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||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||||||| |||||| |||| |
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| T |
15160208 |
ttcaaattgtaaacaaatttagttacttttttccattcaattttcaaatttagattgaaacaaactaaatagttcagctgaatttgttttgcatgt |
15160303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 15159013 - 15159057
Alignment:
| Q |
19 |
ctgcagtggtcttcgtattgagtgaaatct-tgaagatagcataa |
62 |
Q |
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| T |
15159013 |
ctgcagtggtcttcgtattgagtgagatctctgaggatagcataa |
15159057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 183 - 318
Target Start/End: Original strand, 3478464 - 3478600
Alignment:
| Q |
183 |
gatcagactgtatcagttcacaagtcttgagcattactaatccatgcattgccaatgaa-ctatgaaataaggctttcattccaccaaattcccatgtga |
281 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| | || | ||||||||| | ||||||||||| || | ||| |
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| T |
3478464 |
gatcagactgtatcagttaacaagtcttgagcattaccaatgcatgcattgccaatgaacccatcacataaggcttgtaatccaccaaatttccctctga |
3478563 |
T |
|
| Q |
282 |
ttgctaaccacctctacttcagctttagaaggttcat |
318 |
Q |
| |
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| || ||| || ||||||||| ||||||||||||||| |
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| T |
3478564 |
tcgccaactacatctacttcaactttagaaggttcat |
3478600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 282
Target Start/End: Complemental strand, 3538052 - 3537953
Alignment:
| Q |
183 |
gatcagactgtatcagttcaca--agtcttgagcattactaatccatgcattgccaatgaactatgaaataaggctttcattccaccaaattcccatgtg |
280 |
Q |
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||||||| ||||||||| |||| |||||| || ||||| ||| ||||||||||||||||| || | |||||||||||| ||||||||||| || |||| |
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| T |
3538052 |
gatcagaatgtatcagtacacacaagtcttaagaattacaaat--atgcattgccaatgaaccatcacataaggctttcaatccaccaaatttccctgtg |
3537955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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