View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_low_7 (Length: 301)
Name: NF10681_low_7
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 283
Target Start/End: Original strand, 8374813 - 8375079
Alignment:
| Q |
17 |
aggcagccaaacttgttgaaatttattaattagagaatacatagaaagtcaataaaaaggccaagtctaatctaatgttacggttgctcatgacttcttc |
116 |
Q |
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| T |
8374813 |
aggcagccaaacttgttgaaatttattaattagagaatacatagaaagtcaataaaaaggccaagtctaatctaatgttacggttgctcatgacttcttc |
8374912 |
T |
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| Q |
117 |
ccatctattctaattttgatccatttcattcctctgtctatatatataccactcactcccattcattgttttcataaacactcatcttttatcnnnnnnn |
216 |
Q |
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| T |
8374913 |
ccatctattctaattttgatccatttcattcctctgtctatatatataccactcactcccattcattgttttcataaactctcatcttttatcaaaaaaa |
8375012 |
T |
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| Q |
217 |
taaaacaataaactctcatctacaattcatacacaaattttttcagcactcaattctcatcaataca |
283 |
Q |
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| T |
8375013 |
taaaacaataaactctcatctacaattcatacacaaattttttaagctctcaattctcatcaataca |
8375079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 8440230 - 8440070
Alignment:
| Q |
36 |
aatttattaattagagaatacatagaaa-gtcaataaaaaggccaagtctaatctaatgttacggttgctcatgacttcttcccatctattctaattttg |
134 |
Q |
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| T |
8440230 |
aatttattaattaga--atacatagaaaagtcaataaaaaggccaagtctaatct-----tacggttagttgtgacttcttcccatctattctagttttg |
8440138 |
T |
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| Q |
135 |
atccatttcattcctctgtctatatatataccactcactcccattcattgttttcataaacactcatct |
203 |
Q |
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| T |
8440137 |
atccattctcttcc-ctatctatatatataccacccactcccattcattgttttcataaactctcatct |
8440070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 8440083 - 8440024
Alignment:
| Q |
224 |
ataaactctcatctacaattcatacacaaattttttcagcactcaattctcatcaataca |
283 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
8440083 |
ataaactctcatctacaattcatacacaaattttttaagctctcaattctcatcaataca |
8440024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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