View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_low_8 (Length: 292)
Name: NF10681_low_8
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_low_8 |
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| [»] scaffold0115 (1 HSPs) |
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| [»] scaffold0064 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 21087903 - 21087630
Alignment:
| Q |
1 |
atgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaataaccttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
21087903 |
atgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaatacccttt |
21087804 |
T |
|
| Q |
101 |
ttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21087803 |
ttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgaga |
21087704 |
T |
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| Q |
201 |
gaataaatgccatttgaatcagttaaatgggattcaggtaaagccttgaattgttgcaaagaagcattcatcaa |
274 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
21087703 |
gaataaatgccatttgaatctgttaaatgggattcaggtaaagccttgaactgttgtaaagaagcattcatcaa |
21087630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 16366 - 16117
Alignment:
| Q |
1 |
atgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaataaccttt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||| ||||||||| ||| |||||||||| || ||| |||| ||||||||| |||||||| ||||||| |
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| T |
16366 |
atgaaccacaaatttcaatgggaagaggaagagttttagcatcaagttttctccaagagttagacttatgactgtataactcagctgtccaaaaaccttt |
16267 |
T |
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| Q |
101 |
ttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgaga |
200 |
Q |
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|||||| |||||||||||||||||||||| |||||| |||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||| ||| |
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| T |
16266 |
ttgtctatcatctgtttcctttaaccaaatatctttgagcataacaactttatagtcattacttttgggatcaaaaccaaaactagcataatcagtaaga |
16167 |
T |
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| Q |
201 |
gaataaatgccatttgaatcagttaaatgggattcaggtaaagccttgaa |
250 |
Q |
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|||||||| ||||||||||| || ||||||||||||||||||| |||||| |
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| T |
16166 |
gaataaataccatttgaatctgtcaaatgggattcaggtaaagacttgaa |
16117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 55869 - 55597
Alignment:
| Q |
1 |
atgaaccacaaatttcaatgggaagaggaagggtttcagcatcaagctttttccaagagtttgaattaagactatataactcacctgtccaataaccttt |
100 |
Q |
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||||||| |||||||||| ||||||||||| | | || ||||||||| |||||||||| ||||||||||||||||||||| ||||||||| ||||| |
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| T |
55869 |
atgaacctgaaatttcaataggaagaggaagagctgcattttcaagctttctccaagagttagaattaagactatataactcagctgtccaatgcccttt |
55770 |
T |
|
| Q |
101 |
ttgtctttcatctgtttcctttaaccaaagatctttaagcacaataactttatagtcattagttttaggatcaaaaccaaaactagcataatcagtgaga |
200 |
Q |
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||||||||||||||||| ||||| ||||| ||| | ||||||| ||||||||||||||||||||| || || | ||||| | |||| ||||||||||| |
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| T |
55769 |
ttgtctttcatctgttttctttagccaaatgtctcttagcacaacaactttatagtcattagttttcgggtcgagcccaaatccagcaaaatcagtgaga |
55670 |
T |
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| Q |
201 |
gaataaatgccatttgaatcagttaaatgggattcaggtaaagccttgaattgttgcaaagaagcattcatca |
273 |
Q |
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|||||| || |||| |||| || ||||| |||||||| ||||||||||| ||| |||||||| ||||||| |
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| T |
55669 |
gaataattgagatttaaatctgtcaaatgagattcaggcaaagccttgaactgtctcaaagaagggttcatca |
55597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 26813407 - 26813346
Alignment:
| Q |
123 |
aaccaaagatctttaagcacaataactttatagtcattagtttt-aggatcaaaaccaaaac |
183 |
Q |
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||||||| |||| ||||||||| || |||||||||||||||||| || ||||||||||||| |
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| T |
26813407 |
aaccaaatatctctaagcacaacaagtttatagtcattagttttgggggtcaaaaccaaaac |
26813346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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