View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10681_low_9 (Length: 278)
Name: NF10681_low_9
Description: NF10681
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10681_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 2 - 262
Target Start/End: Complemental strand, 37626725 - 37626465
Alignment:
| Q |
2 |
tttttcaatcacaaatactgtcagatgaccttgatcaaacaatcactggtcactgatacgatgatacaatgcaaccaatccattcaatacacacttaatt |
101 |
Q |
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| T |
37626725 |
tttttaaatctcaaatactgtcagatgaccttgatcaaacaatcactggtcactgatacgaggatgcaatgcaaccaatccattcaatacacacttaatt |
37626626 |
T |
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| Q |
102 |
caattttctattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggtgtaatgactgaaccatatcagagtctaactttg |
201 |
Q |
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| T |
37626625 |
caattttttattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggtgtaatgactgaaccatatcagagtctaactttg |
37626526 |
T |
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| Q |
202 |
ccaattccagaagagcaggtatttggttacttcctttgctatattcttccatatagttcct |
262 |
Q |
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| T |
37626525 |
ccaattccagaagagcaggtatttggttacttcctttgctatattcttccatatagttcct |
37626465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 69 - 262
Target Start/End: Complemental strand, 37618276 - 37618083
Alignment:
| Q |
69 |
aatgcaaccaatccattcaatacacacttaattcaattttctattatagtgtaatcttgagcataaagtcacctgcagatttctgttaattctctttggt |
168 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
37618276 |
aatgcaaccaatccatccaatacacacttaattcaattttttattatagtgtaatcttgagcataaagtcacctgcatatttctgctaattctctttggt |
37618177 |
T |
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| Q |
169 |
gtaatgactgaaccatatcagagtctaactttgccaattccagaagagcaggtatttggttacttcctttgctatattcttccatatagttcct |
262 |
Q |
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| T |
37618176 |
gtaatgactgaaccatatcagagtctaactttgccaattccagaagagcaggtatttggttacttcctttgctatattcttccatatagttcct |
37618083 |
T |
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