View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10682_high_12 (Length: 239)
Name: NF10682_high_12
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10682_high_12 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 69 - 224
Target Start/End: Complemental strand, 31035806 - 31035651
Alignment:
| Q |
69 |
tttttatttgagccaatacaatttggagatctgagattttgattgaattttataggtttggagnnnnnnntgattaagttaacatcaacatctatgagtt |
168 |
Q |
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| T |
31035806 |
tttttatttgagccaatacaatttggagatctgagattttgattgaattttataggtttgaagaaaaaaatgattaagttaataccaatatctatgagtt |
31035707 |
T |
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| Q |
169 |
aacttgatcttcttttactttgaacccatgaaattgtatggaattccaaacttctt |
224 |
Q |
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| T |
31035706 |
aactcgattttcttttccttcgaacccatgaaattgtatggaattccaaacttctt |
31035651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 31104369 - 31104257
Alignment:
| Q |
16 |
atgaatgttaagagggaagttgatgaagttatgtaatgttggtgttttctggatttttatttgagccaatacaatttggagatctgagattttgattgaa |
115 |
Q |
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| T |
31104369 |
atgaatgttaagagaaaagttgatgaagatatgtaatgttggtgttttctagatttttatttgagacaatacgatttggaggtttgggattttgattgaa |
31104270 |
T |
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| Q |
116 |
ttttataggtttg |
128 |
Q |
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| T |
31104269 |
ttttatgggtttg |
31104257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 31111411 - 31111297
Alignment:
| Q |
14 |
agatgaatgttaagagggaagttgatgaagttatgtaatgttggtgttttctggatttttatttgagccaatacaatttggagatctgagattttgattg |
113 |
Q |
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| T |
31111411 |
agatgaatgttttgagggaagttgatgaaaatatgtaatcttggttttttcttgatttttttttgagccaatagaatgtggagatttaagattttgattg |
31111312 |
T |
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| Q |
114 |
aattttataggtttg |
128 |
Q |
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| T |
31111311 |
aattttataggtttg |
31111297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 31057434 - 31057359
Alignment:
| Q |
16 |
atgaatgttaagagggaagttgatgaagttatgtaatgttggtgttttctggatttttatttgagccaatacaatttg |
93 |
Q |
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| T |
31057434 |
atgaatgttaagaggaaagttgatgaagatatgtaatgttggtgtttcatgggtttttatt--aggcaatacaatttg |
31057359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 217
Target Start/End: Complemental strand, 31035648 - 31035592
Alignment:
| Q |
161 |
tatgagttaacttgatcttcttttactttgaacccatgaaattgtatggaattccaa |
217 |
Q |
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| T |
31035648 |
tatgagttaactcgatcttctttttctttgaactcataaaattgtatgggattccaa |
31035592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 15311 - 15400
Alignment:
| Q |
35 |
ttgatgaagttatgtaatgttggtgttttctggatttttatttgagccaatacaatttggagatctgagattttgattgaattttatagg |
124 |
Q |
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| T |
15311 |
ttgatgaagatatgcaatgttggtgtttcctggatttttattagagccaatacaatttgaaaaattgagatattgattgaatttgatagg |
15400 |
T |
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