View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10682_high_6 (Length: 316)
Name: NF10682_high_6
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10682_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 8752367 - 8752076
Alignment:
| Q |
14 |
tatatatggggatccactaaccctgcttgat--------gtatacattaattttcatcaatgaaaccatcaaactaataattcttaatagttgataaaat |
105 |
Q |
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| T |
8752367 |
tatatatggggatccactaaccctgcttgataactcactgtatacattaattttcatcaatgaaaccatcaaactaataattcttaatagttgataaaat |
8752268 |
T |
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| Q |
106 |
ttgtaaagtttctgtaattttaaaaaattgtaatgtttcgtacaatcatagaaatattagatacttaagttcaattcaatgtataatgcactgtttgaaa |
205 |
Q |
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| T |
8752267 |
ttgtaaagtttctgtaatttttaaaaattgtaatgtttcatacaatcatagaaatattagatacttaagttcaattcaatgcataatgcactgtttgaaa |
8752168 |
T |
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| Q |
206 |
atataaataaaacatttattattaccgatatccaaactctttaaatatttattataagtgtatttgttgtcacttaaattaaattgtatatttctttcat |
305 |
Q |
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| T |
8752167 |
atataaataaaa---------------atatccaaattctgtaaatatttattataagtgtatttgttgtcacttaaattaaattgtatatttctttcat |
8752083 |
T |
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