View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10682_low_10 (Length: 307)

Name: NF10682_low_10
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10682_low_10
NF10682_low_10
[»] chr1 (2 HSPs)
chr1 (15-290)||(395852-396108)
chr1 (248-289)||(37941956-37941997)
[»] chr6 (1 HSPs)
chr6 (206-235)||(27984246-27984275)
[»] chr4 (4 HSPs)
chr4 (249-286)||(29373881-29373918)
chr4 (208-240)||(1133045-1133077)
chr4 (206-234)||(23983902-23983930)
chr4 (206-234)||(23990597-23990625)
[»] chr2 (3 HSPs)
chr2 (248-289)||(35993351-35993392)
chr2 (248-289)||(39962270-39962311)
chr2 (208-240)||(44458077-44458109)
[»] chr7 (3 HSPs)
chr7 (208-240)||(19302484-19302516)
chr7 (208-240)||(34036034-34036066)
chr7 (206-234)||(35267472-35267500)
[»] chr5 (1 HSPs)
chr5 (208-240)||(28578962-28578994)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 290
Target Start/End: Original strand, 395852 - 396108
Alignment:
Q  15 agcagagatacgagttatgaagttggtggtggatttccacttaacgaacttcttaaccgaaatgaaaactcagaggaggatacttctgctcaacgtgaag 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  395852 agcagcgatacgagttatgaagttggtggtggatttccacttaacgaacttcttaaccgaaataaaaactcagaggaggatacttctgctcaacgtgaag 395951  T
Q  115 cacttcttaaaggtggtgatcaagttatctccgttcttcaagaaatgattacccttgtaagttctttcttaatttcaccaatgagttattttatttgaat 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  395952 cacttcttaaaggtggtgatcaagttatctccgttcttcaagaaatgattacccttgtaagttctttcttattttcaccaatgagttattttatttgaat 396051  T
Q  215 tgacttatttgagcttatctgctgacgtgactatgtttgcgagagcttatagaaacagtttatgacgtgtccatat 290  Q
    ||||||||||                   |||||||||||||||||||||||||||| ||||||||||||||||||    
T  396052 tgacttattt-------------------actatgtttgcgagagcttatagaaacattttatgacgtgtccatat 396108  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 37941956 - 37941997
Alignment:
Q  248 tgtttgcgagagcttatagaaacagtttatgacgtgtccata 289  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  37941956 tgtttgagagagcttatagaaacaatttatgacatgtccata 37941997  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 235
Target Start/End: Complemental strand, 27984275 - 27984246
Alignment:
Q  206 tatttgaattgacttatttgagcttatctg 235  Q
    ||||||||||||||||||||||||||||||    
T  27984275 tatttgaattgacttatttgagcttatctg 27984246  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 29373881 - 29373918
Alignment:
Q  249 gtttgcgagagcttatagaaacagtttatgacgtgtcc 286  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  29373881 gtttgagagagcttatagaaacagcttatgacgtgtcc 29373918  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 1133077 - 1133045
Alignment:
Q  208 tttgaattgacttatttgagcttatctgctgac 240  Q
    ||||||||||||||||||||||||||| |||||    
T  1133077 tttgaattgacttatttgagcttatctactgac 1133045  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 23983902 - 23983930
Alignment:
Q  206 tatttgaattgacttatttgagcttatct 234  Q
    |||||||||||||||||||||||||||||    
T  23983902 tatttgaattgacttatttgagcttatct 23983930  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Original strand, 23990597 - 23990625
Alignment:
Q  206 tatttgaattgacttatttgagcttatct 234  Q
    |||||||||||||||||||||||||||||    
T  23990597 tatttgaattgacttatttgagcttatct 23990625  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 35993351 - 35993392
Alignment:
Q  248 tgtttgcgagagcttatagaaacagtttatgacgtgtccata 289  Q
    |||||| ||||||| ||| |||||||||||||||||||||||    
T  35993351 tgtttgggagagctgatataaacagtttatgacgtgtccata 35993392  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Original strand, 39962270 - 39962311
Alignment:
Q  248 tgtttgcgagagcttatagaaacagtttatgacgtgtccata 289  Q
    |||||| ||||||||||||||||| |||||||| ||||||||    
T  39962270 tgtttgggagagcttatagaaacaatttatgacatgtccata 39962311  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 44458077 - 44458109
Alignment:
Q  208 tttgaattgacttatttgagcttatctgctgac 240  Q
    ||||||||||||||||| |||||||||||||||    
T  44458077 tttgaattgacttatttaagcttatctgctgac 44458109  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 19302484 - 19302516
Alignment:
Q  208 tttgaattgacttatttgagcttatctgctgac 240  Q
    ||||||||||||||||||||||||||| |||||    
T  19302484 tttgaattgacttatttgagcttatctactgac 19302516  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 34036066 - 34036034
Alignment:
Q  208 tttgaattgacttatttgagcttatctgctgac 240  Q
    ||||||||||||||||||||||||||| |||||    
T  34036066 tttgaattgacttatttgagcttatctactgac 34036034  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 35267500 - 35267472
Alignment:
Q  206 tatttgaattgacttatttgagcttatct 234  Q
    |||||||||||||||||||||||||||||    
T  35267500 tatttgaattgacttatttgagcttatct 35267472  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 28578994 - 28578962
Alignment:
Q  208 tttgaattgacttatttgagcttatctgctgac 240  Q
    ||||||||||||||||||||||||||| |||||    
T  28578994 tttgaattgacttatttgagcttatctactgac 28578962  T

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