View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10682_low_13 (Length: 252)

Name: NF10682_low_13
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10682_low_13
NF10682_low_13
[»] chr3 (6 HSPs)
chr3 (96-252)||(21443501-21443657)
chr3 (96-252)||(42066980-42067136)
chr3 (96-252)||(50012801-50012957)
chr3 (96-208)||(21444403-21444515)
chr3 (96-208)||(50011949-50012061)
chr3 (116-208)||(42066144-42066236)
[»] chr8 (1 HSPs)
chr8 (14-93)||(37944800-37944882)
[»] chr7 (2 HSPs)
chr7 (96-132)||(9124408-9124444)
chr7 (96-132)||(9123614-9123650)
[»] chr4 (1 HSPs)
chr4 (96-132)||(5929191-5929227)
[»] chr1 (1 HSPs)
chr1 (96-132)||(42843885-42843921)
[»] chr5 (1 HSPs)
chr5 (96-133)||(7087968-7088005)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 21443501 - 21443657
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccgcatgtgattataggttagattttaaggttgtattaaattttatcatatgtctc 195  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21443501 ggtgtcatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagattttgaggttgtattaaattttatcatatgtctc 21443600  T
Q  196 ccacaccatagcacttctctttcttctctccctcgttgctccccagccaacatcatc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21443601 ccacaccatagcacttctctttcttctctccctcgttgctccccagccaacatcatc 21443657  T

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Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 42067136 - 42066980
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccgcatgtgattataggttagattttaaggttgtattaaattttatcatatgtctc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42067136 ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataggttagattttgaggttgtattaaattttatcatatgtctc 42067037  T
Q  196 ccacaccatagcacttctctttcttctctccctcgttgctccccagccaacatcatc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42067036 ccacaccatagcacttctctttcttctctccctcgttgctcccccgccaacatcatc 42066980  T

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Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 96 - 252
Target Start/End: Complemental strand, 50012957 - 50012801
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccgcatgtgattataggttagattttaaggttgtattaaattttatcatatgtctc 195  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  50012957 ggtgccatttcacatgggaaaggtgaaaatcttcccatgatagaccacatgtgattataggttagattttgaggttgaattaaattttatcatatgtctc 50012858  T
Q  196 ccacaccatagcacttctctttcttctctccctcgttgctccccagccaacatcatc 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50012857 ccacaccatagcacttctctttcttctctccctcgttgctccccagccaacatcatc 50012801  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 96 - 208
Target Start/End: Complemental strand, 21444515 - 21444403
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccgcatgtgattataggttagattttaaggttgtattaaattttatcatatgtctc 195  Q
    |||||| ||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| || ||||||||||||||||||| |||||||||    
T  21444515 ggtgccttttcacatgggaaaggtgaaaatcttcccatgataaaccacatgtgattataggttagatcttgaggttgtattaaattttattatatgtctc 21444416  T
Q  196 ccacaccatagca 208  Q
    |||||||||||||    
T  21444415 ccacaccatagca 21444403  T

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Target: chr3; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 96 - 208
Target Start/End: Original strand, 50011949 - 50012061
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttcccatgatggaccgcatgtgattataggttagattttaaggttgtattaaattttatcatatgtctc 195  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||| |||||||||||| |||||||||    
T  50011949 ggtgccttttcatatgggaaaggtgaaaatcttcccatgatggaccacatgtgattataagttagatcttgaggttgaattaaattttattatatgtctc 50012048  T
Q  196 ccacaccatagca 208  Q
    |||||||||||||    
T  50012049 ccacaccatagca 50012061  T

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Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 42066144 - 42066236
Alignment:
Q  116 aggtgaaaatcttcccatgatggaccgcatgtgattataggttagattttaaggttgtattaaattttatcatatgtctcccacaccatagca 208  Q
    |||||||||||||| |||||| |||| ||||||||||||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||    
T  42066144 aggtgaaaatcttctcatgatagaccacatgtgattatagattagatcttgaggttgtattaaattttattatatgtctcccacaccatagca 42066236  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 37944882 - 37944800
Alignment:
Q  14 aggtaaataaaaagcatgacttacttgtgcggcaaaaaacaaatactat-------ttctttcttctttcccaagcttattattatt 93  Q
    ||||||||||||||||||||||    |||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  37944882 aggtaaataaaaagcatgactt----gtgcggcaaaaaacaaatactatgtactatttctttcttctttcccaagcttattattatt 37944800  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 9124444 - 9124408
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttccca 132  Q
    ||||||||||||||||||||||||||||| |||||||    
T  9124444 ggtgccatttcacatgggaaaggtgaaaaccttccca 9124408  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 9123614 - 9123650
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttccca 132  Q
    |||| |||||||||||| |||||||||||||||||||    
T  9123614 ggtggcatttcacatggaaaaggtgaaaatcttccca 9123650  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 5929191 - 5929227
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttccca 132  Q
    ||||||||||||||||||||||||||||| |||||||    
T  5929191 ggtgccatttcacatgggaaaggtgaaaaccttccca 5929227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 42843885 - 42843921
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttccca 132  Q
    ||||||||||||||||||||||||||||| |||||||    
T  42843885 ggtgccatttcacatgggaaaggtgaaaaccttccca 42843921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 7088005 - 7087968
Alignment:
Q  96 ggtgccatttcacatgggaaaggtgaaaatcttcccat 133  Q
    |||| ||||||||||||||||||| |||||||||||||    
T  7088005 ggtggcatttcacatgggaaaggttaaaatcttcccat 7087968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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