View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10682_low_15 (Length: 249)

Name: NF10682_low_15
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10682_low_15
NF10682_low_15
[»] chr4 (25 HSPs)
chr4 (1-239)||(55669818-55670057)
chr4 (1-55)||(35808372-35808426)
chr4 (1-55)||(26040336-26040390)
chr4 (1-54)||(27839283-27839336)
chr4 (1-56)||(41956188-41956243)
chr4 (5-54)||(2362714-2362763)
chr4 (1-58)||(51290509-51290566)
chr4 (5-56)||(34316697-34316748)
chr4 (5-55)||(31755021-31755071)
chr4 (1-50)||(16559975-16560024)
chr4 (1-54)||(19328724-19328777)
chr4 (1-54)||(34016704-34016757)
chr4 (1-54)||(19876160-19876213)
chr4 (1-54)||(23765657-23765710)
chr4 (1-54)||(26831763-26831816)
chr4 (1-50)||(45688822-45688871)
chr4 (2-54)||(31168214-31168266)
chr4 (5-53)||(54339195-54339243)
chr4 (5-52)||(31487804-31487851)
chr4 (5-51)||(30475508-30475554)
chr4 (1-54)||(20811342-20811395)
chr4 (1-54)||(32131221-32131274)
chr4 (1-54)||(51267003-51267056)
chr4 (5-50)||(54400291-54400336)
chr4 (1-53)||(50514592-50514643)
[»] chr8 (12 HSPs)
chr8 (1-58)||(19389283-19389340)
chr8 (1-53)||(45338083-45338135)
chr8 (1-56)||(21016313-21016368)
chr8 (1-55)||(21016033-21016087)
chr8 (11-55)||(18808956-18809000)
chr8 (1-55)||(4990012-4990066)
chr8 (1-54)||(5129433-5129486)
chr8 (22-55)||(22488765-22488798)
chr8 (17-56)||(35930231-35930270)
chr8 (1-55)||(6939237-6939291)
chr8 (1-55)||(26672869-26672922)
chr8 (1-56)||(19976465-19976521)
[»] chr2 (20 HSPs)
chr2 (1-55)||(765126-765180)
chr2 (1-55)||(39401511-39401565)
chr2 (95-176)||(9215041-9215122)
chr2 (5-58)||(27495206-27495259)
chr2 (1-57)||(1321247-1321303)
chr2 (1-56)||(17056033-17056088)
chr2 (1-56)||(17068480-17068535)
chr2 (1-56)||(17074463-17074518)
chr2 (5-56)||(23685638-23685689)
chr2 (1-56)||(17095042-17095097)
chr2 (1-50)||(16361645-16361694)
chr2 (1-50)||(39085773-39085822)
chr2 (1-57)||(2966619-2966675)
chr2 (18-50)||(9991421-9991453)
chr2 (1-52)||(862668-862719)
chr2 (11-54)||(4023355-4023398)
chr2 (5-40)||(33726463-33726498)
chr2 (22-51)||(8033381-8033410)
chr2 (1-46)||(17603890-17603935)
chr2 (1-54)||(44299658-44299711)
[»] chr1 (25 HSPs)
chr1 (1-55)||(34874646-34874700)
chr1 (1-56)||(41147450-41147505)
chr1 (1-55)||(22346210-22346264)
chr1 (1-55)||(49508707-49508761)
chr1 (1-54)||(2125681-2125734)
chr1 (1-58)||(11385780-11385837)
chr1 (1-54)||(27209695-27209748)
chr1 (1-54)||(43433854-43433907)
chr1 (1-55)||(7190448-7190502)
chr1 (1-54)||(24140852-24140904)
chr1 (1-54)||(28850884-28850937)
chr1 (1-55)||(4940713-4940767)
chr1 (5-55)||(29966906-29966956)
chr1 (1-55)||(32213862-32213916)
chr1 (1-54)||(31975566-31975619)
chr1 (1-50)||(40845330-40845379)
chr1 (5-54)||(42607298-42607347)
chr1 (2-55)||(47655344-47655397)
chr1 (1-52)||(8244167-8244219)
chr1 (1-55)||(5945499-5945553)
chr1 (22-52)||(8772511-8772541)
chr1 (1-34)||(932151-932184)
chr1 (17-50)||(26060288-26060321)
chr1 (18-50)||(38680885-38680917)
chr1 (1-57)||(50295404-50295460)
[»] chr7 (20 HSPs)
chr7 (1-53)||(40763328-40763380)
chr7 (2-55)||(43567482-43567535)
chr7 (1-54)||(48454799-48454852)
chr7 (1-56)||(24359683-24359738)
chr7 (5-56)||(29034770-29034821)
chr7 (1-53)||(5240310-5240362)
chr7 (1-53)||(8258621-8258673)
chr7 (1-56)||(5347947-5348002)
chr7 (1-60)||(30538451-30538510)
chr7 (1-54)||(7322930-7322983)
chr7 (1-54)||(8292824-8292877)
chr7 (5-52)||(8380524-8380571)
chr7 (1-56)||(27053468-27053523)
chr7 (5-55)||(36279202-36279252)
chr7 (1-54)||(22707128-22707180)
chr7 (1-50)||(43958064-43958113)
chr7 (1-50)||(44207715-44207764)
chr7 (18-50)||(675090-675122)
chr7 (1-53)||(1910323-1910374)
chr7 (1-55)||(46478535-46478586)
[»] chr6 (5 HSPs)
chr6 (1-54)||(26572059-26572112)
chr6 (1-52)||(10855511-10855562)
chr6 (1-54)||(29692318-29692371)
chr6 (1-54)||(32786295-32786347)
chr6 (1-53)||(16437568-16437620)
[»] scaffold0062 (3 HSPs)
scaffold0062 (1-55)||(16748-16802)
scaffold0062 (1-55)||(26916-26970)
scaffold0062 (1-55)||(37082-37136)
[»] chr3 (20 HSPs)
chr3 (5-55)||(29915551-29915601)
chr3 (5-55)||(29964704-29964754)
chr3 (1-55)||(41346353-41346407)
chr3 (1-54)||(1803967-1804020)
chr3 (5-58)||(36730126-36730179)
chr3 (1-53)||(37509190-37509242)
chr3 (1-55)||(25102298-25102352)
chr3 (1-55)||(48136699-48136753)
chr3 (1-54)||(44570363-44570416)
chr3 (1-52)||(35306411-35306462)
chr3 (1-55)||(32415648-32415702)
chr3 (1-54)||(4759827-4759880)
chr3 (1-54)||(8715479-8715531)
chr3 (1-54)||(9067366-9067418)
chr3 (12-51)||(10854953-10854992)
chr3 (1-51)||(46317565-46317615)
chr3 (1-54)||(8847429-8847482)
chr3 (5-54)||(44695648-44695697)
chr3 (1-50)||(46055754-46055803)
chr3 (22-54)||(4195441-4195473)
[»] chr5 (19 HSPs)
chr5 (1-50)||(35653236-35653285)
chr5 (5-56)||(338739-338790)
chr5 (1-55)||(16315510-16315564)
chr5 (1-59)||(28143095-28143153)
chr5 (1-50)||(15915911-15915960)
chr5 (1-53)||(4421942-4421994)
chr5 (5-53)||(39567986-39568034)
chr5 (1-56)||(104904-104959)
chr5 (1-54)||(35945325-35945378)
chr5 (5-53)||(8410225-8410273)
chr5 (1-55)||(1479112-1479166)
chr5 (16-54)||(4962494-4962532)
chr5 (1-55)||(5151568-5151622)
chr5 (1-39)||(25017283-25017321)
chr5 (1-55)||(34546857-34546911)
chr5 (18-56)||(37243942-37243980)
chr5 (1-55)||(43414040-43414094)
chr5 (13-58)||(40099422-40099467)
chr5 (22-54)||(7736271-7736303)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 55669818 - 55670057
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaacttaaccatccaaaa-atgagtaataaaccaatttacttacc 99  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||    
T  55669818 tttctatttttatccccttatccaatgccccaagggcaatggttagcattctcctaaacttaatcatccaaaaaatgagtaataaaccaatgtacttacc 55669917  T
Q  100 cttgatgccagttttccagacagtgttggtgtacttaagacccgaaacaatattatggtttactttgaaagtaaacaccagcctataacgagaaccttct 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  55669918 cttgatgccagttttccagacagtgttggtgtacttaagacccgaaacaatattatggtttacttggaaagtaaacaccagcctataacgagaaccttct 55670017  T
Q  200 ttcaaagtaaaccataaaccctcgggatttcctgtctctg 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55670018 ttcaaagtaaaccataaaccctcgggatttcctgtctctg 55670057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 35808426 - 35808372
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  35808426 tttctatttttatccccttatccaatgccccaagggcaatggttagcattctcct 35808372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26040390 - 26040336
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  26040390 tttctatttttatccccttatccaatgccccaaggacaatggttagcattctcct 26040336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27839336 - 27839283
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  27839336 tttctatttttattcccttatccaatgccccaagggcaatggttagcattctcc 27839283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41956243 - 41956188
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  41956243 tttctatttttatcctcttatccgatgccccaagggcaatggttagcattctccta 41956188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 2362714 - 2362763
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  2362714 tatttttatccccttatccgatgccccaagggcaatggttagcattctcc 2362763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 51290509 - 51290566
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    |||||| || ||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  51290509 tttctaattttatccccttatccaatgtcccaaggacaatggttagcattctcctaaa 51290566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 34316748 - 34316697
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||| |||| |||||||||||||||||||||||||||| ||||||||||||    
T  34316748 tatttttatctccttatccaatgccccaagggcaatggtgagcattctccta 34316697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 31755021 - 31755071
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||| |||||||||||||||| |||||| |||||||||||||||||||||    
T  31755021 tatttttatccccttatccaataccccaatggcaatggttagcattctcct 31755071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 16560024 - 16559975
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| ||| || |||||||||||||||||||||||||||||||||    
T  16560024 tttctatttttattcctttatccaatgccccaagggcaatggttagcatt 16559975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19328777 - 19328724
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||||||||||||||||| |||  ||||||||||||||||||    
T  19328777 tttctatttttatccccttatccaatgccctaagaacaatggttagcattctcc 19328724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34016704 - 34016757
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||||||||||||||||| | ||||| ||||||||||||||||||    
T  34016704 tttctatttttatccccttatccaatgtctcaaggacaatggttagcattctcc 34016757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19876213 - 19876160
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||||||||||||||||||  |||||| ||| |||||||||||||    
T  19876213 tttctatttttatccccttatccaatgcttcaagggtaattgttagcattctcc 19876160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23765657 - 23765710
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||| |||| |||||||||||| ||||| |||| ||||||||||||||||||||    
T  23765657 tttcaatttttatccccttatctaatgcaccaaaggcaatggttagcattctcc 23765710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26831816 - 26831763
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||||| ||||| ||||||||||||| |||| |||||||||||||    
T  26831816 tttctatttttatcctcttattcaatgccccaaggacaattgttagcattctcc 26831763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 45688822 - 45688871
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| |||||||||||||||| |||||||  ||||||||||||||    
T  45688822 tttctatttttatccccttatccaataccccaagaacaatggttagcatt 45688871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 31168214 - 31168266
Alignment:
Q  2 ttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||| ||||||||| || ||||| ||||||||||| |||||||||||||    
T  31168214 ttctatttttatccccttgtctaatgctccaagggcaatagttagcattctcc 31168266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 54339195 - 54339243
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||| |||||| |||||||||||||||| | |||||||||||||||||    
T  54339195 tatttttatccctttatccaatgccccaacgacaatggttagcattctc 54339243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 31487804 - 31487851
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattct 52  Q
    ||||| ||||||||||| |||||| |||||||||||||||| ||||||    
T  31487804 tatttttatccccttattcaatgctccaagggcaatggttaacattct 31487851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 30475508 - 30475554
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattc 51  Q
    ||||| |||| ||||||||||| ||| ||||||||||||||||||||    
T  30475508 tatttttatctccttatccaataccctaagggcaatggttagcattc 30475554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 20811342 - 20811395
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||||||||  ||| |||||| |||||| |||||||||||||    
T  20811342 tttctatttttatccccttatttaataccccaaaggcaatagttagcattctcc 20811395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32131221 - 32131274
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||| | ||||||||||  |||||||||||||||| ||||||||    
T  32131221 tttctatttttatctctttatccaatgttccaagggcaatggttaacattctcc 32131274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51267003 - 51267056
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||| ||||||||||||  ||||| |||||||||||| ||||||    
T  51267003 tttctatttttatctccttatccaatgttccaagagcaatggttagccttctcc 51267056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 54400291 - 54400336
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||| ||| || |||||||||||||| ||||||||||||||||||    
T  54400291 tatttttattcctttatccaatgccccgagggcaatggttagcatt 54400336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 50514643 - 50514592
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||||||| ||||| ||||||||||| | |||| ||||||||||||||||||    
T  50514643 tttctattt-tatcctcttatccaatgtcacaagagcaatggttagcattctc 50514592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 19389340 - 19389283
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19389340 tttctatttttatccccttatccaatgccccaagggcaatggttagcattctcctaaa 19389283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 45338083 - 45338135
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  45338083 tttctatttttatccccttatccaatgcccaaaggacaatggttagcattctc 45338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 21016313 - 21016368
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||    
T  21016313 tttctatttttatccccttatccaaagccccaaaggcaatggttagcattatccta 21016368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 21016087 - 21016033
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||||||||||||||| ||| ||| |||||||||||||||||||||    
T  21016087 tttctatttttatccccttatccaaagcctcaaaggcaatggttagcattctcct 21016033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 18808956 - 18809000
Alignment:
Q  11 tatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||    
T  18808956 tatccccttatccaatgccccaagggcaatggttaacattatcct 18809000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4990012 - 4990066
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||||||||||||||||||  ||||| ||||| |||||||||||||    
T  4990012 tttctatttttatccccttatccaatgctacaaggacaatgattagcattctcct 4990066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5129486 - 5129433
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||| |||| |||||||||||| ||||| | |||||||||||||||||||||||    
T  5129486 tttcaatttttatccccttatcaaatgctctaagggcaatggttagcattctcc 5129433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 55
Target Start/End: Complemental strand, 22488798 - 22488765
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||||||||||||||||||||||||||||    
T  22488798 ccaatgccccaagggcaatggttagcattctcct 22488765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 35930231 - 35930270
Alignment:
Q  17 cttatccaatgccccaagggcaatggttagcattctccta 56  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  35930231 cttatccaatgctccaagggcaatggttatcattctccta 35930270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 6939237 - 6939291
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||| | |||| |||||||||| || |||||||||||||||||||    
T  6939237 tttctatttttatctcattattcaatgccccatggacaatggttagcattctcct 6939291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 26672869 - 26672922
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||| ||||||||| ||| |||| |||||||||||||||||||    
T  26672869 tttctatttttatccctttatccaataccc-aaggacaatggttagcattctcct 26672922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19976521 - 19976465
Alignment:
Q  1 tttctatttctatccc-cttatccaatgccccaagggcaatggttagcattctccta 56  Q
    |||||| || |||||| ||||||||| ||||||| |||||||||||||||| |||||    
T  19976521 tttctacttttatcccacttatccaaagccccaaaggcaatggttagcattatccta 19976465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 765180 - 765126
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  765180 tttctatttttatccccttatccaatgccccaagggcaatggttagcattctcct 765126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 39401565 - 39401511
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  39401565 tttctatttttatccccttatccaatgccccaagggcaatggttagcattctcct 39401511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 9215041 - 9215122
Alignment:
Q  95 ttacccttgatgccagttttccagacagtgttggtgtacttaagacccgaaacaatattatggtttactttgaaagtaaaca 176  Q
    ||||| ||||| ||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| || | |||||| ||||    
T  9215041 ttacctttgataccagttttccacacagtgttggtgtacttgagacctgaaacaatgttatggttgacctggaaagtgaaca 9215122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 27495206 - 27495259
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||||||||    
T  27495206 tatttttatccccttattcaatgccccaagtgcaatggttagcattctcctaaa 27495259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1321247 - 1321303
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaa 57  Q
    ||||||||| ||||| |||||||||||| |||||| |||||||||||||||||||||    
T  1321247 tttctatttttatcctcttatccaatgctccaaggacaatggttagcattctcctaa 1321303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17056088 - 17056033
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||    
T  17056088 tttctttttttatccctttatccaatgccctaagggcaatggttagcattctccta 17056033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17068535 - 17068480
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||| ||| |||||| ||||||||||||| |||||||||||||||||||||||||    
T  17068535 tttctttttttatccctttatccaatgccctaagggcaatggttagcattctccta 17068480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17074518 - 17074463
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| |||||| ||||| ||||||| |||||||||||||||||||||||||    
T  17074518 tttctatttttatccctttatctaatgccctaagggcaatggttagcattctccta 17074463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 23685689 - 23685638
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||| |||||| |||||||||||||||||||||||||||| ||||||||||    
T  23685689 tatttttatccctttatccaatgccccaagggcaatggttaacattctccta 23685638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 17095097 - 17095042
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| |||||| ||||||||||||| |||  ||||||||||||||||||||    
T  17095097 tttctatttttatccctttatccaatgccctaagaacaatggttagcattctccta 17095042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 16361645 - 16361694
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| ||| |||||||||||||| ||||||||||| |||||||||    
T  16361645 tttctatttttattcccttatccaatgctccaagggcaattgttagcatt 16361694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 39085822 - 39085773
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| |||||| |||||||||| |||||| |||||||||||||||    
T  39085822 tttctatttttatccctttatccaatgtcccaagagcaatggttagcatt 39085773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 2966619 - 2966675
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaa 57  Q
    ||||||||| ||||||||||||||||| ||| ||   ||||||||||||||||||||    
T  2966619 tttctatttttatccccttatccaatgtccccagataaatggttagcattctcctaa 2966675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 9991453 - 9991421
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    |||||||||||||||||||||||||||||||||    
T  9991453 ttatccaatgccccaagggcaatggttagcatt 9991421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 862668 - 862719
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattct 52  Q
    ||||||||| |||||| |||| |||||||| ||||||||| |||||||||||    
T  862668 tttctatttttatcccattattcaatgccctaagggcaattgttagcattct 862719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 4023355 - 4023398
Alignment:
Q  11 tatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||||| ||||||||||||| ||||||||| ||||||||    
T  4023355 tatccccttattcaatgccccaaggacaatggttaacattctcc 4023398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 33726463 - 33726498
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaat 40  Q
    ||||| ||||||||||||||||||||||||||||||    
T  33726463 tatttttatccccttatccaatgccccaagggcaat 33726498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 8033381 - 8033410
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattc 51  Q
    ||||||||||||||||||||||||||||||    
T  8033381 ccaatgccccaagggcaatggttagcattc 8033410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 17603890 - 17603935
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttag 46  Q
    ||||||||| |||| | |||||||||||||||||||||||| ||||    
T  17603890 tttctatttttatcgcgttatccaatgccccaagggcaatgattag 17603935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44299711 - 44299658
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||||| |||| ||||||||||||  |||||| ||||||||||||    
T  44299711 tttctatttttatcctcttacccaatgccccaaaagcaatgattagcattctcc 44299658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34874646 - 34874700
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34874646 tttctatttttatccccttatccaatgccccaagggcaatggttagcattctcct 34874700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 41147505 - 41147450
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  41147505 tttctatttttatccccttatccaatgccccaaggacaatggttagcattctccta 41147450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22346264 - 22346210
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||    
T  22346264 tttctatttttattcccttatccaaagccccaagggcaatggttagcattctcct 22346210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 49508761 - 49508707
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||    
T  49508761 tttctatttttatccccttatccaatgccccaagggcaatggttaacattttcct 49508707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2125734 - 2125681
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||||||||||||||||||||||||  ||||||||||||||||||    
T  2125734 tttctatttttatccccttatccaatgccccaagaacaatggttagcattctcc 2125681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11385837 - 11385780
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    ||||||||| ||||||||||||||||||  ||||||||||||| ||||||||||||||    
T  11385837 tttctatttttatccccttatccaatgctgcaagggcaatggtcagcattctcctaaa 11385780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27209748 - 27209695
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||||    
T  27209748 tttctatttttatccctttatccaatgccccaaggacaatggttagcattctcc 27209695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43433854 - 43433907
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||||||||||||||||||||| ||||| |||||||||||||    
T  43433854 tttctatttttatccccttatccaatgccccaagagcaatagttagcattctcc 43433907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 7190502 - 7190448
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||||| |||| |||||||||||||||||| |||||||||||||||    
T  7190502 tttctatttttatcctcttaaccaatgccccaagggcaaaggttagcattctcct 7190448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24140852 - 24140904
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  24140852 tttctatttttatccccttatc-aatgccccaaaggcaatggttagcattctcc 24140904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 28850937 - 28850884
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||| | |||||| |||||||||||||||||||||||||||||||    
T  28850937 tttctatttttattctcttatctaatgccccaagggcaatggttagcattctcc 28850884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 4940767 - 4940713
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||||| || |  ||||||||||||||||||||    
T  4940767 tttctatttttatccccttatccaatgcgcctaaagcaatggttagcattctcct 4940713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 29966906 - 29966956
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||| |||||||||||||||||| |||||| ||||||||| |||||||||    
T  29966906 tatttttatccccttatccaatgctccaaggacaatggttaacattctcct 29966956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32213916 - 32213862
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||| |||| |||||| ||||||||||| ||||||||    
T  32213916 tttctatttttatccccttatctaatgtcccaagagcaatggttagtattctcct 32213862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31975566 - 31975619
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||| | ||||||||| || ||||||||||||||||||||||||    
T  31975566 tttctatttatatctctttatccaatacctcaagggcaatggttagcattctcc 31975619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 40845330 - 40845379
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| ||||||||||| ||||| | ||||||||||||||||||||    
T  40845330 tttctatttttatccccttattcaatgtctcaagggcaatggttagcatt 40845379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 42607347 - 42607298
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||| |||||||||||||||| ||| |||||||||||||| ||||||||    
T  42607347 tatttttatccccttatccaataccctaagggcaatggttaacattctcc 42607298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 47655397 - 47655344
Alignment:
Q  2 ttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||| ||||||||||| ||||| |  ||||||||||||||||||||||||    
T  47655397 ttctatttttatccccttattcaatgtcttaagggcaatggttagcattctcct 47655344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 8244167 - 8244219
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatgg-ttagcattct 52  Q
    ||||||| | |||||||||||||||||||||||| ||||||| ||||||||||    
T  8244167 tttctatatttatccccttatccaatgccccaagagcaatggattagcattct 8244219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5945499 - 5945553
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||  | ||||||||||| |||||| |||||||||||||||||||    
T  5945499 tttctatttttatttcgttatccaatgctccaaggacaatggttagcattctcct 5945553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 52
Target Start/End: Original strand, 8772511 - 8772541
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattct 52  Q
    |||||||||||||||||||||||||||||||    
T  8772511 ccaatgccccaagggcaatggttagcattct 8772541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 932184 - 932151
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaag 34  Q
    ||||||||| ||||||||||||||||||||||||    
T  932184 tttctatttttatccccttatccaatgccccaag 932151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 26060288 - 26060321
Alignment:
Q  17 cttatccaatgccccaagggcaatggttagcatt 50  Q
    |||||||||||| |||||||||||||||||||||    
T  26060288 cttatccaatgctccaagggcaatggttagcatt 26060321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38680917 - 38680885
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||||||||||| |||||||||||||||    
T  38680917 ttatccaatgccccaagagcaatggttagcatt 38680885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 50295460 - 50295404
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaa 57  Q
    ||||||||| || |||||||||||||||||||| | | ||| ||| |||||||||||    
T  50295460 tttctatttttacccccttatccaatgccccaaagacgatgattaacattctcctaa 50295404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40763328 - 40763380
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40763328 tttctatttttatccccttatccaatgccccaagggcaatggttagcattctc 40763380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 43567535 - 43567482
Alignment:
Q  2 ttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||| ||||||    
T  43567535 ttctatttttatctccttatccaatgccccaagggcaatggttagcaatctcct 43567482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48454852 - 48454799
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  48454852 tttctatttttatccccttatccaatgccccaagggtaatggttaacattctcc 48454799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 24359738 - 24359683
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| |||||||||||||||| ||| |||||||||||||| ||||||||||    
T  24359738 tttctatttttatccccttatccaatacccgaagggcaatggttaacattctccta 24359683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 29034770 - 29034821
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||    
T  29034770 tatttttatccccttatccaatgcctcaaggacaatggttagcattctccta 29034821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 5240362 - 5240310
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||||||| |||||| |||||||||||| ||||| |||||||||||||||||    
T  5240362 tttctatttttatccctttatccaatgcctcaaggacaatggttagcattctc 5240310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8258673 - 8258621
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||||||| ||||||||||||| |||||||||||||||| |||| |||||||    
T  8258673 tttctatttttatccccttatccgatgccccaagggcaatagttaacattctc 8258621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5348002 - 5347947
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| ||| ||||||| |||||||| ||||| |||||||||||||||||||    
T  5348002 tttctatttatattcccttattcaatgccctaagggtaatggttagcattctccta 5347947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 30538510 - 30538451
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaact 60  Q
    ||||||||| |||||||||||| |||| ||||||| ||||| |||||||||||| |||||    
T  30538510 tttctatttttatccccttatctaatgtcccaaggacaatgattagcattctccaaaact 30538451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7322983 - 7322930
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||||| ||||||||||  | ||||||||||||||||||||||||    
T  7322983 tttctatttttatcctcttatccaatatctcaagggcaatggttagcattctcc 7322930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8292824 - 8292877
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||||||||||||||| |||| | ||||| ||||||||||||    
T  8292824 tttctatttttatccccttatccaatgctccaaagacaatgattagcattctcc 8292877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 52
Target Start/End: Original strand, 8380524 - 8380571
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattct 52  Q
    ||||| |||||||||||||||| |||||||||| ||||||| ||||||    
T  8380524 tatttttatccccttatccaataccccaagggccatggttaacattct 8380571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 27053523 - 27053468
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| |||||| ||||||||||||| |||| ||||| |||| |||||||||    
T  27053523 tttctatttttatccctttatccaatgccctaaggacaatgattagtattctccta 27053468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 36279202 - 36279252
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||| |||||  ||||||||||||||||| | ||||||||||||||||||    
T  36279202 tatttttatcctattatccaatgccccaagagtaatggttagcattctcct 36279252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22707128 - 22707180
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||  |||| ||||||||||| ||||||||||||||||||||    
T  22707128 tttctatttttatcct-ttattcaatgccccaaaggcaatggttagcattctcc 22707180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 43958113 - 43958064
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| |||| ||||||||||||  | |||||||||||||||||||    
T  43958113 tttctatttttatcgccttatccaatggtctaagggcaatggttagcatt 43958064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44207715 - 44207764
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| | | || |||||||||||| ||||||||||||||||||||    
T  44207715 tttctatttttgttcctttatccaatgccacaagggcaatggttagcatt 44207764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 675122 - 675090
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||||||| |||||||||||||||||||    
T  675122 ttatccaatgcccaaagggcaatggttagcatt 675090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 1910323 - 1910374
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||||||| |||||| ||||| ||||||| |||||||||| |||||||||||    
T  1910323 tttctatttttatccc-ttatcaaatgccctaagggcaatgattagcattctc 1910374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46478586 - 46478535
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||||    |||||||||| |||||||||||||    
T  46478586 tttctatttttatccccttatccaatg---taagggcaatgattagcattctcct 46478535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 26572112 - 26572059
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  26572112 tttctatttttatccccttatccaatgccccaaggacaatggttagcattctcc 26572059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10855511 - 10855562
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattct 52  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||||||||||    
T  10855511 tttctatttttatccccttatcaaatgccccaaggacaatggttagcattct 10855562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 29692371 - 29692318
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||  |||||||||||||||||||||||| ||||||||||||    
T  29692371 tttctatttttatccatttatccaatgccccaagggcaatgattagcattctcc 29692318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 32786295 - 32786347
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  32786295 tttctatttttatccc-ttatccaataccccaagggcaatggttagcattctcc 32786347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 16437620 - 16437568
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||||||| ||||| |||||||||||||  ||| ||||||||||||||||||    
T  16437620 tttctatttttatccacttatccaatgccttaagagcaatggttagcattctc 16437568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16802 - 16748
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  16802 tttctatttttatccccttatccaatgccctatgggcaatggttagcattctcct 16748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26970 - 26916
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  26970 tttctatttttatccccttatccaatgccctatgggcaatggttagcattctcct 26916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 37136 - 37082
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  37136 tttctatttttatccccttatccaatgccctatgggcaatggttagcattctcct 37082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 29915601 - 29915551
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  29915601 tatttttatccccttatccaacgccccaagggcaatggttagcattctcct 29915551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 29964754 - 29964704
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  29964754 tatttttatccccttatccaacgccccaagggcaatggttagcattctcct 29964704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 41346353 - 41346407
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||    
T  41346353 tttctatttttatccccttatccaatgccccaaggacaatggttaacattctcct 41346407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1803967 - 1804020
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||    
T  1803967 tttctatttttatccccttatccaatgccccaaggacaatgattagcattctcc 1804020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 36730179 - 36730126
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    ||||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  36730179 tatttttatccccttatccaatgccataagggcaatggttagcattctcctaaa 36730126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 37509190 - 37509242
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    |||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  37509190 tttcaatttttatccccttatccaatgccccaaaggcaatggttagcattctc 37509242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25102352 - 25102298
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||| | |||||||||| |||||||||||||||||||||||||||    
T  25102352 tttctatttttatctcattatccaatgtcccaagggcaatggttagcattctcct 25102298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48136753 - 48136699
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||    
T  48136753 tttctatttttattcccttatccaataccccaaggacaatggttagcattctcct 48136699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 44570416 - 44570363
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||||  ||||| ||||| |||||||||||||||||||||||||||||||    
T  44570416 tttctattttgatccctttatcgaatgccccaagggcaatggttagcattctcc 44570363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 35306411 - 35306462
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattct 52  Q
    ||||||||| ||||||||||||||||  |||||||||||||||||| |||||    
T  35306411 tttctatttttatccccttatccaattgcccaagggcaatggttagtattct 35306462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 32415648 - 32415702
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||| |||||||||||| ||||||||||| ||| |||||||||    
T  32415648 tttctatttttatccctttatccaatgcctcaagggcaatgattaacattctcct 32415702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 4759880 - 4759827
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| |||||| ||||||||||| ||||  |||||||||||||||||||    
T  4759880 tttctatttttatccctttatccaatgctccaaatgcaatggttagcattctcc 4759827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8715531 - 8715479
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| || ||||||||||||||||| |||| ||||||||||||||||||    
T  8715531 tttctattttta-ccccttatccaatgccctaaggacaatggttagcattctcc 8715479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 9067418 - 9067366
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| || ||||||||||||||||| |||| ||||||||||||||||||    
T  9067418 tttctattttta-ccccttatccaatgccctaaggacaatggttagcattctcc 9067366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 10854953 - 10854992
Alignment:
Q  12 atccccttatccaatgccccaagggcaatggttagcattc 51  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  10854953 atccccttatccaatgccccaagggcaatgattaacattc 10854992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 46317565 - 46317615
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattc 51  Q
    ||||||||| ||||  ||||||||||| | |||||||||||||||||||||    
T  46317565 tttctatttttatctacttatccaatgtctcaagggcaatggttagcattc 46317615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8847482 - 8847429
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||||||||||||||||| |||||| |||||| | | ||||||||    
T  8847482 tttctatttttatccccttatccaatgtcccaagtgcaatgataaacattctcc 8847429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 44695697 - 44695648
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||| ||||||||||||||||| ||||| | ||||| ||||||||||||    
T  44695697 tatttttatccccttatccaatgtcccaatgacaatgattagcattctcc 44695648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 46055803 - 46055754
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| | | || ||||||||||| |||||||||||||||||||||    
T  46055803 tttctatttttgttcctttatccaatgctccaagggcaatggttagcatt 46055754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 4195441 - 4195473
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||||||| |||||||||||||||||||    
T  4195441 ccaatgccccaagagcaatggttagcattctcc 4195473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 35653285 - 35653236
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  35653285 tttctatttttatccccttatccaatgcaccaagggcaatggttagcatt 35653236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 338790 - 338739
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||| |||||| ||||||||||||||||||||||||||||| |||||||||    
T  338790 tatttttatccctttatccaatgccccaagggcaatggttaggattctccta 338739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 16315564 - 16315510
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||    
T  16315564 tttctatttttatccccttatccgatgcccaaagggcagtggttagcattctcct 16315510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28143153 - 28143095
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcctaaac 59  Q
    ||||||||| |||| |||||| ||||| ||||||||||||||||||||||||| |||||    
T  28143153 tttctatttttatctccttattcaatgtcccaagggcaatggttagcattctcttaaac 28143095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 15915911 - 15915960
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcatt 50  Q
    ||||||||| ||| |||||||||||||||||||| |||||||||||||||    
T  15915911 tttctatttttattcccttatccaatgccccaagtgcaatggttagcatt 15915960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 4421994 - 4421942
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||| |||||||    
T  4421994 tttctatttttatcctcttatccaatgccctaagggcaatggttaacattctc 4421942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 39567986 - 39568034
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||| |||||| |||||||||||||||||||||||||||| |||||||    
T  39567986 tatttttatcccattatccaatgccccaagggcaatggttatcattctc 39568034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 104959 - 104904
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctccta 56  Q
    ||||||||| ||  |||||||||||| ||||||| |||||||||||||||||||||    
T  104959 tttctatttttactcccttatccaataccccaagagcaatggttagcattctccta 104904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35945325 - 35945378
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    ||||||||| ||| |||||||||||| ||||||| |||||| ||||||||||||    
T  35945325 tttctatttttattcccttatccaataccccaagagcaatgattagcattctcc 35945378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 8410225 - 8410273
Alignment:
Q  5 tatttctatccccttatccaatgccccaagggcaatggttagcattctc 53  Q
    ||||| |||||||||||| ||| |||||| |||||||||||||||||||    
T  8410225 tatttttatccccttatctaataccccaaaggcaatggttagcattctc 8410273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 1479166 - 1479112
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| ||||||||||| ||||||| ||||   ||||||||||||||||||    
T  1479166 tttctatttttatccccttattcaatgcctcaagaataatggttagcattctcct 1479112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 4962532 - 4962494
Alignment:
Q  16 ccttatccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  4962532 ccttatccaatgtcccaagggcaatgggtagcattctcc 4962494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5151568 - 5151622
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||| |||||| ||| | |||||||||||| ||||||    
T  5151568 tttctatttttatccccttatcaaatgcctcaatgacaatggttagcactctcct 5151622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 25017321 - 25017283
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaa 39  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  25017321 tttctatttttatccccttatccaatgcctcaagggcaa 25017283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34546857 - 34546911
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||||| | |||||| ||||| ||| |||||||||    
T  34546857 tttctatttttatccccttatccaatactccaaggacaatgattatcattctcct 34546911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 37243942 - 37243980
Alignment:
Q  18 ttatccaatgccccaagggcaatggttagcattctccta 56  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  37243942 ttatccaatgcctcaagggcaatgattagcattctccta 37243980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 43414094 - 43414040
Alignment:
Q  1 tttctatttctatccccttatccaatgccccaagggcaatggttagcattctcct 55  Q
    ||||||||| |||||||||||||  || ||||||||||||  |||||||||||||    
T  43414094 tttctatttttatccccttatcccttgtcccaagggcaattcttagcattctcct 43414040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 40099422 - 40099467
Alignment:
Q  13 tccccttatccaatgccccaagggcaatggttagcattctcctaaa 58  Q
    ||||||||||||||||| ||||| ||||||||| |||||| |||||    
T  40099422 tccccttatccaatgccacaaggacaatggttaacattcttctaaa 40099467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 7736303 - 7736271
Alignment:
Q  22 ccaatgccccaagggcaatggttagcattctcc 54  Q
    |||||| ||||||||||||||||||||||||||    
T  7736303 ccaatgtcccaagggcaatggttagcattctcc 7736271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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