View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10682_low_16 (Length: 243)
Name: NF10682_low_16
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10682_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 107 - 224
Target Start/End: Original strand, 21443764 - 21443881
Alignment:
| Q |
107 |
acagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttcccacaactcagtttccctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
21443764 |
acagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttccaacaactcggtttccctt |
21443863 |
T |
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| Q |
207 |
caattcaattgatcactg |
224 |
Q |
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| T |
21443864 |
caattcaattgatcactg |
21443881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 50012694 - 50012577
Alignment:
| Q |
107 |
acagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttcccacaactcagtttccctt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
50012694 |
acagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttccaacaactcggtttccctt |
50012595 |
T |
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| Q |
207 |
caattcaattgatcactg |
224 |
Q |
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|||||||||||||||||| |
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| T |
50012594 |
caattcaattgatcactg |
50012577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 42066872 - 42066756
Alignment:
| Q |
108 |
cagtgctgcaaatcttcatttcctatgagatttcaaccatggtcggagaaaattcataaaaacagcttcatttcaagttcccacaactcagtttcccttc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |
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| T |
42066872 |
cagtgctgcaaatcttcatttcctatgagatttcaaccatggttggagaaaattcataaaaacagcttcatttcaagtttcaacaactcggtttcccttc |
42066773 |
T |
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| Q |
208 |
aattcaattgatcactg |
224 |
Q |
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||||||||||||||||| |
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| T |
42066772 |
aattcaattgatcactg |
42066756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 21443658 - 21443712
Alignment:
| Q |
1 |
ctcatcaacctcaaacacctagaatgaaggttgtatcaaatcatcatcacacata |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21443658 |
ctcatcaacctcaaacacctagaatgaaggttgtatcaaatcagcatcacacata |
21443712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 42066979 - 42066925
Alignment:
| Q |
1 |
ctcatcaacctcaaacacctagaatgaaggttgtatcaaatcatcatcacacata |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42066979 |
ctcatcaacctcaaacacctagaatgaaggttgtatcaaatcagcatcacacata |
42066925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 50012800 - 50012746
Alignment:
| Q |
1 |
ctcatcaacctcaaacacctagaatgaaggttgtatcaaatcatcatcacacata |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
50012800 |
ctcatcaacctcaaacacctagaatgaaggttgtatcaaatcagcatcacacata |
50012746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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