View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10682_low_18 (Length: 229)
Name: NF10682_low_18
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10682_low_18 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 55669636 - 55669408
Alignment:
| Q |
1 |
cagttgacagcactaaagagatgattggaacattcagccctcaagcagagccttacacgcatgaaatgccagaagagacaacaccgtctggtttatttgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55669636 |
cagttgacagcactaaagagatgattggaacattcagccctcaagcagagccttacacgcatgaaatgccagaagagacaacaccatctggtttatttgc |
55669537 |
T |
|
| Q |
101 |
cagagggacatactcagctagaactgaggtactactttcttttatctatagctataatgcttgcttgattcctgattcttatgatgtaatctgtactata |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
55669536 |
cagagggacatactcagctagaactaaggtactactttcttttatctatagctataatgcttgcttgattcctgattcttatgatgtaatttgtactata |
55669437 |
T |
|
| Q |
201 |
taaaagtaatatggcaacaatgaatatga |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
55669436 |
taaaagtaatatggcaacaatgaatatga |
55669408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 9214713 - 9214591
Alignment:
| Q |
1 |
cagttgacagcactaaagagatgattggaacattcagccctcaagcagagccttacacgcatgaaatgccagaagagacaacaccgtctggtttatttgc |
100 |
Q |
| |
|
||||||| |||| |||||| ||||||||||| ||||| |||||| | ||| ||||||| ||||| ||||| |||||||||||||| ||||| | ||||| |
|
|
| T |
9214713 |
cagttgatagcagtaaagaaatgattggaaccttcagtcctcaaactgagacttacactcatgagatgcctgaagagacaacaccatctgggatgtttgc |
9214614 |
T |
|
| Q |
101 |
cagagggacatactcagctagaa |
123 |
Q |
| |
|
|||||| |||| |||||||||| |
|
|
| T |
9214613 |
tagaggggcatattcagctagaa |
9214591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 37445230 - 37445169
Alignment:
| Q |
15 |
aaagagatgattggaacattcagccctcaagcagagccttacacgcatgaaatgccagaaga |
76 |
Q |
| |
|
||||||||| ||||||| |||||||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
37445230 |
aaagagatgcttggaactttcagccctcaaccagagccttacacacatgagatgccagaaga |
37445169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University