View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10682_low_19 (Length: 215)
Name: NF10682_low_19
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10682_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 26955716 - 26955914
Alignment:
| Q |
11 |
tgagatgaatgtgattttcaaactcatatatcctcctccgtcaccagcaaaacaattgagattaaacaatcaatgcactccccaataaatcttcctccca |
110 |
Q |
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| T |
26955716 |
tgagatgaatgtgattttcaaactcatatatcctcctccatcacctgcaaaacaattgagattaaacgatcaacgcactccccaataaatcttcctccca |
26955815 |
T |
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| Q |
111 |
agcaaacaacctcttacggcactttcacgtctcaccattcatatcactccccaacccaaatcatacatctcaactatagtcgccattttgttcttctct |
209 |
Q |
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| T |
26955816 |
agcaaacaacctcttacgccactttcacgtctcaccattcatatcactccccaacccaaatcatacatctcaactatagtcgccattttgttcttctct |
26955914 |
T |
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Complemental strand, 35889567 - 35889505
Alignment:
| Q |
99 |
atcttcctcccaagcaaacaacctcttacggcactttcacgtctcaccattcatatcactccc |
161 |
Q |
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| T |
35889567 |
atcttcctcccaaacaaacaacctccgacgccacttccacgcctcaccattcacatccctccc |
35889505 |
T |
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