View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10682_low_2 (Length: 447)
Name: NF10682_low_2
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10682_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Original strand, 47624461 - 47624879
Alignment:
| Q |
18 |
acaatatgccaacagctagtgagtgctcgattgtttcacatttttctttgcttacnnnnnnnnntaacaagtgagtgcactattcatcggtcttcaaatg |
117 |
Q |
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| T |
47624461 |
acaatatgccaacagctagtgagtgctcgattgtttcacacttttctttgcttacaaaaaaaaataacaagtgagtgctctattcatcggtcttcaaatg |
47624560 |
T |
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| Q |
118 |
ttaatcaagctttgttaagccgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggataat |
217 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624561 |
ttaatcaagctttgttaagctgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactacgaatcattcatgggataat |
47624660 |
T |
|
| Q |
218 |
gcagtaactgatatatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaatgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624661 |
gcagtaactgatatatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaacatatcattaactaaatgc |
47624760 |
T |
|
| Q |
318 |
ttgtttttcaaagcatgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactatctagcaaatccttcatcccat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47624761 |
ttgtttttcaaagcatgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactatctagcaaatccttcatcccat |
47624860 |
T |
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| Q |
418 |
tgagtaattttatcttcat |
436 |
Q |
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|||| |||||||||||||| |
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| T |
47624861 |
tgagcaattttatcttcat |
47624879 |
T |
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