View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10682_low_3 (Length: 443)
Name: NF10682_low_3
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10682_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 427
Target Start/End: Original strand, 45236517 - 45236924
Alignment:
| Q |
18 |
gaagaaccaaatcagctgccgctaaccttgtgttttagaatatatcattgtttctctttgttcatatccttgctgtgaaatgaattccattaaaaggttc |
117 |
Q |
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| T |
45236517 |
gaagaaccaaattagctgccactaaccttgtgttttagaatatatcattgtttctctttgttcatatccttgctgtgaaatgacttccattaaaaggttc |
45236616 |
T |
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| Q |
118 |
atctagatattcctaatacttaatgaatcaaacatgtcataaattcaatcatactcatacttaatattttatgtgcttctgctaatgatttatacttttg |
217 |
Q |
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| T |
45236617 |
atctaagtattcctaatacttaatgaatcaaa--tgtcataaattcgatcatactcatacttaatattttatgtgcttctgctaatgatttatacttttg |
45236714 |
T |
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| Q |
218 |
tattgtattgaacatgtcttatgaaattgatcttcgtttggacctaattccaacaatatggtctgaatttatacatctgatttttggttagccatagact |
317 |
Q |
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| T |
45236715 |
tattgtattgaacatgtcttatgaaattgatcttcgtttggacctaattccaacaatatggtctgaatgtatacatttgatttttagttagccatagact |
45236814 |
T |
|
| Q |
318 |
cgttaagtgagacaaatttacaatttaaatagttttataatttaaaatatgtgactgaaatcacacttcaagaatatgttgtagattgatgctgctgctg |
417 |
Q |
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| T |
45236815 |
cgttaagtgagacaaatttacaatttaaatagttttataatttaaaatatgtgactgaaatcacacttcaagaatatgttctagattgatgctgctgctg |
45236914 |
T |
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| Q |
418 |
tgactgaaat |
427 |
Q |
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| T |
45236915 |
tgactgaaat |
45236924 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 272
Target Start/End: Complemental strand, 33753309 - 33753229
Alignment:
| Q |
191 |
tgcttctgctaatgatttatacttttgtattgtattgaacatgtcttatgaaattgatcttcgtttggacctaattccaaca |
272 |
Q |
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| T |
33753309 |
tgcttccgctaatgatctatacttttat-ttgtattatgcatgtcctgtgaaattgatctttatttagacctaattccaaca |
33753229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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