View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10682_low_7 (Length: 317)
Name: NF10682_low_7
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10682_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 26 - 315
Target Start/End: Original strand, 32001537 - 32001829
Alignment:
| Q |
26 |
tggtcatggtcatgataacaataacactatgttgaactttcagcaagatgatgatattatggcggctgtggaagcatttagagcaagcggtggatttgat |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32001537 |
tggtcatggtcatgataacaataacactatgttgaactttcagcaagatgatgatattatggcggctgtggaagcatttagagcaagcggtggatttgat |
32001636 |
T |
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| Q |
126 |
aataatattaacacccctcctatttcaacaaatgttcttcaagttcttgagggtgg---taatcaggaaaatttggatggaagcatgatgtgtaacgtga |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||| |
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| T |
32001637 |
aataatattaacacccctcctatttcaacaaatgttcttcaagttcttgagggtggtgatcatcaggaaaatttggatggaagcatgatatgtaacgtga |
32001736 |
T |
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| Q |
223 |
atctcgaggagaataagcattattggaatagcatacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgat |
315 |
Q |
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| T |
32001737 |
atctcgaggagaataagcattattggaatagcatacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgat |
32001829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 26 - 315
Target Start/End: Original strand, 31942578 - 31942870
Alignment:
| Q |
26 |
tggtcatggtcatgataacaataacactatgttgaactttcagcaagatgatgatattatggcggctgtggaagcatttagagcaagcggtggatttgat |
125 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
31942578 |
tggtcatggtcatgataacaataacactatgttgaactttcagcaagatgatgatattatggcggctgtggaagcatttagagcaagcggtggttttgat |
31942677 |
T |
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| Q |
126 |
aataatattaacacccctcctatttcaacaaatgttcttcaagttcttgagggtgg---taatcaggaaaatttggatggaagcatgatgtgtaacgtga |
222 |
Q |
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| T |
31942678 |
aataatattaacacccctcctatttcaacaaatgttcttcaagttcttgagggtggtgatcatcaggaaaatttggatggaagcatgatttgtaacgtga |
31942777 |
T |
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| Q |
223 |
atctcgaggagaataagcattattggaatagcatacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgat |
315 |
Q |
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| T |
31942778 |
atctcgaggagaataagcattattggaatagcatacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgat |
31942870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 128 - 311
Target Start/End: Original strand, 32004565 - 32004753
Alignment:
| Q |
128 |
taatattaacacccctcctatttcaacaaatgttcttcaagtt------cttgagggtggtaatcaggaaaatttggatggaagcatgatgtgtaacgtg |
221 |
Q |
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||||||||| || |||||||||||||||||| ||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
32004565 |
taatattaatacacctcctatttcaacaaatattcttgaagttaaatttcttgagggtagtgatcaggaaaatttggatggaagcatgatgtgtaacgtg |
32004664 |
T |
|
| Q |
222 |
aatctcgaggagaataagcattattggaatagcatacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctat |
311 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||| |||||| |||||||| |
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| T |
32004665 |
aatctcgaggagaataagcattattggaatagca-acttggtttggttaatgaatctcatgatttgaacattatgctataatgaagctat |
32004753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 26 - 129
Target Start/End: Original strand, 32004254 - 32004361
Alignment:
| Q |
26 |
tggtcatggtcatgataacaataacactatgttgaactttcagcaagatgatgatattatggcggc------tgtggaagcatttagagcaagcggtgga |
119 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||||||| || | |||||| |
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| T |
32004254 |
tggtcatgatcatgataacaataacact--gttgaactttcagcaagataattatattatggcggcattacatgtggaagcatttagatcatgtggtgga |
32004351 |
T |
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| Q |
120 |
tttgataata |
129 |
Q |
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|||||||||| |
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| T |
32004352 |
tttgataata |
32004361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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