View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10682_low_9 (Length: 313)
Name: NF10682_low_9
Description: NF10682
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10682_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 41183972 - 41184137
Alignment:
| Q |
20 |
atgtaagctaggtaaaattcatgtgtacaactagtaaaaagacaaaagacaaagttgtacaaagtgaacattttagagtgaaacttgtcnnnnnnnnnnn |
119 |
Q |
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| T |
41183972 |
atgtaagctaggtaaaatttatgtgtacaactagtaaaaagacaaaagac-aagttgtacaaagtgaacattttagagtgaaacttgtcttttttctttt |
41184070 |
T |
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| Q |
120 |
naccggtggaccaaaattttagagggatgaaatttatttttattagaacagaacgaaaattaaaatt |
186 |
Q |
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| T |
41184071 |
taccggtggaccaaaattttagagtgacgaaatttatttttattagaacagaacgaaaattaaaatt |
41184137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 41184171 - 41184289
Alignment:
| Q |
181 |
aaaattaacatgatgcata--gttattcaatttgaatgccttttcaatcattttgtaacagatatattacaataacggtaaatatctaggaacatcgtga |
278 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41184171 |
aaaattaacatgatgcatatagttattcaatttgaatgccttttcaataattttgtaacagatatattacaataacggtaaatatctaggaacatcgtga |
41184270 |
T |
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| Q |
279 |
cccatgtcgtgtatgtttt |
297 |
Q |
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||||||||||||||||||| |
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| T |
41184271 |
cccatgtcgtgtatgtttt |
41184289 |
T |
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