View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10683_high_4 (Length: 330)
Name: NF10683_high_4
Description: NF10683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10683_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 3 - 312
Target Start/End: Complemental strand, 30666212 - 30665903
Alignment:
| Q |
3 |
agcaggaccagagaagctcttccaaatatgctcagtatatagcatatgttgtgctacataatcttctaactaatttgatgttgaaattgtgttacagccc |
102 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
30666212 |
agcaagaccaaagaagctcttccaaatatgctcagtatatagcatatgttgtgctacataatcttctacataatttgatgttgaaattgtgttacagccc |
30666113 |
T |
|
| Q |
103 |
catcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatcaggaag |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30666112 |
catcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatcaggaag |
30666013 |
T |
|
| Q |
203 |
ggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtgaatgcca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30666012 |
ggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtgaatgcca |
30665913 |
T |
|
| Q |
303 |
cactcatgaa |
312 |
Q |
| |
|
|||||||||| |
|
|
| T |
30665912 |
cactcatgaa |
30665903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 312
Target Start/End: Complemental strand, 34435480 - 34435265
Alignment:
| Q |
97 |
cagccccatcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatc |
196 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || |||| |||||| | ||||| | ||||| || |
|
|
| T |
34435480 |
cagccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataata |
34435381 |
T |
|
| Q |
197 |
aggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtga |
296 |
Q |
| |
|
|| || || || ||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||||| ||||| ||||| || ||||| || ||||| | |
|
|
| T |
34435380 |
agaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaa |
34435281 |
T |
|
| Q |
297 |
atgccacactcatgaa |
312 |
Q |
| |
|
|||| ||||| ||||| |
|
|
| T |
34435280 |
atgcaacacttatgaa |
34435265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 98 - 312
Target Start/End: Complemental strand, 6853850 - 6853636
Alignment:
| Q |
98 |
agccccatcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatca |
197 |
Q |
| |
|
||||| || ||||||||||| ||||| | ||||||||||||||||||||||| ||||| |||| || || || |||||||| || | |||||||||| |
|
|
| T |
6853850 |
agccctataatgatgagtgccggagaattggaaagtggaaatgcaggagagcctgcaaagttgattaggcaaaggtaccgtgaggcgtccgacattatca |
6853751 |
T |
|
| Q |
198 |
ggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtgaa |
297 |
Q |
| |
|
| || ||||||||||| ||||| |||||||| ||||| ||||||||||| ||| | |||||||| || || |||||||| ||||||||||||||||| || |
|
|
| T |
6853750 |
gaaaaggaaagatgtgctgtctcttcatcaatgatcttgatgcaggagctggtagaatgggtggcactactcaatacacagtcaacaaccagatggtaaa |
6853651 |
T |
|
| Q |
298 |
tgccacactcatgaa |
312 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
6853650 |
tgcaaccctcatgaa |
6853636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University