View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10683_low_11 (Length: 235)
Name: NF10683_low_11
Description: NF10683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10683_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 223
Target Start/End: Complemental strand, 49350486 - 49350289
Alignment:
| Q |
26 |
atttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatccttcatgaaccataaaggatggagaagctgaggcacttaaagaacca |
125 |
Q |
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| T |
49350486 |
atttaggccgcatagaaaatccaaatgaccatttacaaaatcaacccaacatccttcatgaaccataaaggatgcagaagctgaggcacttaaagaacca |
49350387 |
T |
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| Q |
126 |
atgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtgtgttttaaccttggaggaagtattctacctatgcta |
223 |
Q |
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| T |
49350386 |
atgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtgtgttttaacattggaggaagtattctacctatgcta |
49350289 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 36663822 - 36663734
Alignment:
| Q |
92 |
aaaggatggagaagctgaggcacttaaagaaccaatgtcaaaggacaaagattacatcccaaattcactcatctttagttcaatcagatacttgtg |
187 |
Q |
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|||||| | |||||||||||||||||||||||| |||| ||||||||| ||| ||| |||| || ||||||||||||||| ||||||||| |
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| T |
36663822 |
aaaggaagcagaagctgaggcacttaaagaacccatgt-------caaagattatatcacaacttcagtcttctttagttcaatcaaatacttgtg |
36663734 |
T |
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