View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10683_low_12 (Length: 227)
Name: NF10683_low_12
Description: NF10683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10683_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 44948039 - 44948260
Alignment:
| Q |
1 |
ttaaacaatctaaaacacaattggaatgtaagatcagacagctccctgattgcataactacatacaatccattttcatagactatacttagcatcaatat |
100 |
Q |
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| T |
44948039 |
ttaaacaatctaaaacacaattggaatgtaagatcagacagctccctgattgcataactacatacaatccattttcatagactatacttagcatcaatat |
44948138 |
T |
|
| Q |
101 |
agtgtgtattttctaactttttagttgcttttggcttaagaatcattaaatccaatgaaaatcttgcttggaagacgcttcatactatatttgcatcctc |
200 |
Q |
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| T |
44948139 |
agtgtgtattttctaactttctagttgcttttggcttaagaatcattaaatccaatgaaaatcttgcttggaagacgcttcatactatatttgcatcctc |
44948238 |
T |
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| Q |
201 |
ttctgatttcacctttgcttct |
222 |
Q |
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||||||||||||||| |||||| |
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| T |
44948239 |
ttctgatttcaccttggcttct |
44948260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 11450624 - 11450551
Alignment:
| Q |
149 |
aatccaatgaaaatcttgcttggaagacgcttcatactatatttgcatcctcttctgatttcacctttgcttct |
222 |
Q |
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| T |
11450624 |
aatccaatgaaaatcttgcctggaagatccttcatactatctttgcatcctcctctgatttcaccttagcttct |
11450551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 11450696 - 11450640
Alignment:
| Q |
42 |
ctccctgattgcataactacatacaatccattttcatag-actatacttagcatcaa |
97 |
Q |
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| T |
11450696 |
ctccttgattgcataactacatataatccattttcatagtactacacttagcatcaa |
11450640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 11450750 - 11450707
Alignment:
| Q |
1 |
ttaaacaatctaaaacacaattggaatgtaagatcagacagctc |
44 |
Q |
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||||| ||||||||||||| | |||||||||||||||||||||| |
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| T |
11450750 |
ttaaataatctaaaacacagtcggaatgtaagatcagacagctc |
11450707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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