View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10683_low_3 (Length: 400)
Name: NF10683_low_3
Description: NF10683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10683_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 44 - 381
Target Start/End: Complemental strand, 413388 - 413066
Alignment:
| Q |
44 |
tttatctaattgacctaaactgaatagcattcttttaccacaaagaaaactccaacccatgtggtgcatatattcctaatggatggatagtgcaaacaat |
143 |
Q |
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| T |
413388 |
tttatctaattgacataaactaaatagcattcttttaccacaaagaaaactccaacccatgtggtgcatatattcctaatggatggatggtgcaaacaat |
413289 |
T |
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| Q |
144 |
gaaaactggactcgacacgtatgtatctatatctagaggccagtgttacatcaaattatcattaatggtaagcctgccattttcaagtttttctgaaagg |
243 |
Q |
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| T |
413288 |
gaaaactggactcgacacgtatatatctatatctagaggccagtgttacatcaaattatcattaatggtaagcctgccattttcaagtttttctgaaagg |
413189 |
T |
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| Q |
244 |
atggatatttcttcatcaatactatttagttttagttcactgttcgaatctggatatagatagacagcttttgtcgcaattatagacagcaattcatgct |
343 |
Q |
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| T |
413188 |
atggatatttcttaatc---actatt------------actgttcgaatctggatatagataaacagcttttgtcgcaattatagacaacaattcatgct |
413104 |
T |
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| Q |
344 |
ccgtacttccgtcatcgatttatgttatacaatttagt |
381 |
Q |
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| T |
413103 |
ccgtacttccgtcatcgatttatgttatacaatttagt |
413066 |
T |
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