View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10683_low_4 (Length: 334)
Name: NF10683_low_4
Description: NF10683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10683_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 139 - 325
Target Start/End: Original strand, 34817674 - 34817860
Alignment:
| Q |
139 |
tatgacacgaatatatgtaagaatctgacattgaagtgtcatggtaggaagttgagctcaatatatgtgttaccttagggtacaagggtattccacgttg |
238 |
Q |
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| T |
34817674 |
tatgacacgaatatatgtaagaatctgacattgaagtgtcatggtaggaagttgagctcaatatatgtgttaccttagggtacaagggtattccacgttg |
34817773 |
T |
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| Q |
239 |
caggcagagctgagggatggtagcaaaacaccaaagaggcaagcaataaagagggaaatatgtgagttctgcaaaacacaggttctg |
325 |
Q |
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| T |
34817774 |
caggcagagctgagggatggtagcaaaacaccaaagaggcaagcaataaagagggaaatatgtgagttctgcaaaacacaggctctg |
34817860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 34817506 - 34817643
Alignment:
| Q |
1 |
ttcatcatccagattctctgctcattgatccagttatggagtgttcctccagttaagaacacttctagtaaatgttttgaaagagaggatagaaagatgn |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34817506 |
ttcatcatccagattctctgctcattgatccagttatggagtgttcctccagttaagaacacttctagtaaatgttttgaaagagatgatagaaagatga |
34817605 |
T |
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| Q |
101 |
nnnnnnngacaatgaaaaatgtatctgaaacctgtcaa |
138 |
Q |
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| T |
34817606 |
aaaaaaagacaatgaaaaatgtatctgaaacctgtcaa |
34817643 |
T |
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