View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10683_low_6 (Length: 304)
Name: NF10683_low_6
Description: NF10683
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10683_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 58 - 293
Target Start/End: Original strand, 7309865 - 7310100
Alignment:
| Q |
58 |
tccttcgtctccttcgagaatgatatgaagcttgattgttgttggaagcaagaagagcttttcgaaccgaaaaaaggagagtttgaaacttcattcggtg |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7309865 |
tccttcgtctccttcgagaatgatatgaagcttgattgttgttggaagcaagaagagcttttcgaaccgaaaaaaggagagtttgaaacttcattcggtg |
7309964 |
T |
|
| Q |
158 |
ataactagagtaagttgaacggagatggtcgacgatatcatcagcagtggagaatcttgatttgcatgaatcgattcgacggagtagggtttgttggaga |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7309965 |
ataactagagtaagttgaacggagatggtcgacgatatcatcagcagtggagaatcttgatttgcatgaatcgattcgacggagtagggtttgttggaga |
7310064 |
T |
|
| Q |
258 |
aacctttctcttcctcctcctcctccgcttgttctt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
7310065 |
aacctttctcttcctcctcctcctccgcttgttctt |
7310100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University