View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10684_1 (Length: 882)
Name: NF10684_1
Description: NF10684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10684_1 |
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Alignment Details
Target: chr1 (Bit Score: 802; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 802; E-Value: 0
Query Start/End: Original strand, 1 - 870
Target Start/End: Original strand, 49671522 - 49672389
Alignment:
| Q |
1 |
atctaagcttccagttgatatgaacaggcataaggatgagattaacttgtcaaacctggccttaaagaaaatacaagagggtgcattaattgagttggtg |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49671522 |
atctaagcttccagttgatatgaagaggcataaggatgagattaacttgtcaaacctggccttaaagaaaatacaagagggtgcattaattgagttggtg |
49671621 |
T |
|
| Q |
101 |
gatccttatcttggttttgattcagacaatgagataaagcggatgatagtttcggtggcagagttagcttttcaatgtttgcaaagggacaaggaattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49671622 |
gatccttatcttggttttgattcagacaatgagataaagcggatgatagtttcggtggcagagttagcttttcaatgtttgcaaagggacaaggaattga |
49671721 |
T |
|
| Q |
201 |
gaccttccatggaagaggttttgaagatgttgatgagaattgaaagtgggaaggatgtgcctgagcatagagttgaagaagatgtgtgtccaccctctcc |
300 |
Q |
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| T |
49671722 |
gaccttccatggaagaggttttgaagatgttgatgagaattgaaagtgggaaggatgtgcctgagcatatagttgaagaagatgtgtgtccaccctctcc |
49671821 |
T |
|
| Q |
301 |
accttcaccagatggggatgggaatgagattgagattggactattccaaaaaatgatgccacagccatcacctaaagctgtggttgataaatgggatagt |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49671822 |
accttcaccagatggggatgggaatgagattgagattggactattccaaaaaatgatgccacagccatcacctaaagctgtggttgataaatgggatagt |
49671921 |
T |
|
| Q |
401 |
aaatccagtaccttctaataccagtggtcgttgatagcatagccttgcaaactaattactgatatgcagcatttaaacattgtcattcataataagaggg |
500 |
Q |
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| T |
49671922 |
aaatccagtaccttctaataccagtggtcgttgatagcatagccttgcaaactaattactgatatgcagcatttaaacattgtcattcataataagaggg |
49672021 |
T |
|
| Q |
501 |
cacactttttacttttggtatacaagtgattagattttagctctattgtcattgtaaacgagtttaaatataatgtatcttccctcccccaacttttgta |
600 |
Q |
| |
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| T |
49672022 |
cacactttttacttttggtatacaagtgattagattttagctctattgtcattgtaaacgagtttaaatataatgtatcttccctcccccaacttttgta |
49672121 |
T |
|
| Q |
601 |
gtatatatannnnnnnnaataatcttagataatatgttatacaaaaagggttttgttacaactatattaagggcagtttttgtccttttagacagtagtg |
700 |
Q |
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| T |
49672122 |
--atatatattttttttaataatcttagataatatgttatacaaaaagggttttgttacaactatattaagggcagtttttgtccttttagacagtagtg |
49672219 |
T |
|
| Q |
701 |
tgtatataatgatttgattctcttttcttttatatgagattttatttgcttccttcgaaccaagcaattgagctcaaatgattataaagacctttttcct |
800 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49672220 |
tgtatataatgatttgattctctcttcttttatatgagattttatttgcttccttcgaaccaagcaattgagctcaaatgattataaagacctttttcct |
49672319 |
T |
|
| Q |
801 |
tgaaaccggaaggttaacaccaaannnnnnncttcgtctcttgtaatgttaggacttctcatttgatatt |
870 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
49672320 |
tgaaaccggaaggttaacaccaaatttttttcttcgtctcttgtaatgttaggacttctcatttgatatt |
49672389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 49667651 - 49667766
Alignment:
| Q |
101 |
gatccttatcttggttttgattcagacaatgagataaagcggatgatagtttcggtggcagagttagcttttcaatgtttgcaaagggacaaggaattga |
200 |
Q |
| |
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||||||| |||||||||| ||||||||| |||| | || ||||||||||||| |||||||| || |||||||| |||||||||| |||||| || || | |
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| T |
49667651 |
gatccttctcttggttttcattcagacagtgaggttaataggatgatagtttcagtggcagaattggcttttcagtgtttgcaaaaggacaaagagttaa |
49667750 |
T |
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| Q |
201 |
gaccttccatggaaga |
216 |
Q |
| |
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||||||| |||||||| |
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| T |
49667751 |
gaccttctatggaaga |
49667766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 49683928 - 49683984
Alignment:
| Q |
177 |
gtttgcaaagggacaaggaattgagaccttccatggaagaggttttgaagatgttga |
233 |
Q |
| |
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|||||||| |||||||||||||||| ||||| ||||| ||||||||| || |||||| |
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| T |
49683928 |
gtttgcaacgggacaaggaattgaggccttcaatggatgaggttttggaggtgttga |
49683984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 248
Target Start/End: Original strand, 49675878 - 49675968
Alignment:
| Q |
158 |
gcagagttagcttttcaatgtttgcaaagggacaaggaattgagaccttccatggaagaggttttgaagatgttgatgagaattgaaagtg |
248 |
Q |
| |
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|||||||| |||||||| |||||||| |||| ||||||||||| || || ||||| ||||||||| | || ||| ||||||||| |||| |
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| T |
49675878 |
gcagagttggcttttcagtgtttgcagcgggataaggaattgaggccctcaatggatgaggttttggacgtgctgaggagaattgatagtg |
49675968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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