View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10684_3 (Length: 554)
Name: NF10684_3
Description: NF10684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10684_3 |
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Alignment Details
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 12933952 - 12933811
Alignment:
| Q |
1 |
cttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatc |
99 |
Q |
| |
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|||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || || |||||||||||||||| |||| || ||| |
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| T |
12933952 |
cttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaaccatgtagatc |
12933854 |
T |
|
| Q |
100 |
tcctcttccaaatctccatgaagaaatgcagttttcacatcca |
142 |
Q |
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|| || || ||||||||||||||||||||||| || ||||||| |
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| T |
12933853 |
tcttcatctaaatctccatgaagaaatgcagtctttacatcca |
12933811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 119
Target Start/End: Complemental strand, 36999974 - 36999937
Alignment:
| Q |
82 |
ggttgctccatataaatctcctcttccaaatctccatg |
119 |
Q |
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| T |
36999974 |
ggttgctccatataaatctcctcttccaagtcaccatg |
36999937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 14177222 - 14177081
Alignment:
| Q |
1 |
cttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatc |
99 |
Q |
| |
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|||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || || |||||||||||||||| |||| || ||| |
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| T |
14177222 |
cttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttct-caaatccttctggttgaaccatgtagatc |
14177124 |
T |
|
| Q |
100 |
tcctcttccaaatctccatgaagaaatgcagttttcacatcca |
142 |
Q |
| |
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|| || || ||||||||||||||||||||||| || ||||||| |
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| T |
14177123 |
tcttcatctaaatctccatgaagaaatgcagtctttacatcca |
14177081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 28608653 - 28608794
Alignment:
| Q |
1 |
cttggtgcctgcttcaatccataaagactcttattcaatttgcacaccatgtgtttctttccag-ctacttcaaatccttctggttgctccatataaatc |
99 |
Q |
| |
|
|||||||| || || |||||||| | ||||| ||||||||||| |||| ||| | ||||| || || ||| ||||||||||||||| |||| || ||| |
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| T |
28608653 |
cttggtgcttgttttaatccatacaagctcttcttcaatttgcaaaccaagtgctcctttcgagtcttctt-aaatccttctggttgaaccatgtagatc |
28608751 |
T |
|
| Q |
100 |
tcctcttccaaatctccatgaagaaatgcagttttcacatcca |
142 |
Q |
| |
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|| || || ||||||||||||||||||||||| || ||||||| |
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| T |
28608752 |
tcttcatctaaatctccatgaagaaatgcagtctttacatcca |
28608794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 134
Target Start/End: Complemental strand, 20706234 - 20706182
Alignment:
| Q |
81 |
tggttgctccatataaatctcctcttccaaatctccatgaagaaatgcagtttt |
134 |
Q |
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|||||||||||||||| |||||| ||| ||||||||||| ||||||||| |||| |
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|
| T |
20706234 |
tggttgctccatataa-tctccttttctaaatctccatgtagaaatgcattttt |
20706182 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 6692123 - 6692086
Alignment:
| Q |
112 |
tctccatgaagaaatgcagttttcacatccaactgctc |
149 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||| |
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| T |
6692123 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
6692086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 796698 - 796735
Alignment:
| Q |
112 |
tctccatgaagaaatgcagttttcacatccaactgctc |
149 |
Q |
| |
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|||||||||||||||||||| |||||||| |||||||| |
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| T |
796698 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
796735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 8273129 - 8273092
Alignment:
| Q |
112 |
tctccatgaagaaatgcagttttcacatccaactgctc |
149 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
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|
| T |
8273129 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
8273092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 19944073 - 19944036
Alignment:
| Q |
112 |
tctccatgaagaaatgcagttttcacatccaactgctc |
149 |
Q |
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|||||||||||||||||||| |||||||| |||||||| |
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| T |
19944073 |
tctccatgaagaaatgcagtcttcacatctaactgctc |
19944036 |
T |
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