View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10684_4 (Length: 374)
Name: NF10684_4
Description: NF10684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10684_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 15 - 374
Target Start/End: Original strand, 49671746 - 49672105
Alignment:
| Q |
15 |
agatgttgatgagaattgaaagtgggaaggatgtgcctgagcatagagttgaagaagatgtgtgtccaccctctccaccttcaccagatggggatgggaa |
114 |
Q |
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| T |
49671746 |
agatgttgatgagaattgaaagtgggaaggatgtgcctgagcatatagttgaagaagatgtgtgtccaccctctccaccttcaccagatggggatgggaa |
49671845 |
T |
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| Q |
115 |
tgagattgagattggactattccaaaaaatgatgccacagccatcacctaaagctgtggttgataaatgggatagtaaatccagtaccttctaataccag |
214 |
Q |
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| T |
49671846 |
tgagattgagattggactattccaaaaaatgatgccacagccatcacctaaagctgtggttgataaatgggatagtaaatccagtaccttctaataccag |
49671945 |
T |
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| Q |
215 |
tggtcgttgatagcatagccttgcaaactaattactgatatgcagcatttaaacattgtcattcataataagagggcacactttttacttttggtataca |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49671946 |
tggtcgttgatagcatagccttgcaaactaattactgatatgcagcatttaaacattgtcattcataataagagggcacactttttacttttggtataca |
49672045 |
T |
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| Q |
315 |
agtgattagattttagctctattgtcattgtaaacgagtttaaatataatgtatcttccc |
374 |
Q |
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| T |
49672046 |
agtgattagattttagctctattgtcattgtaaacgagtttaaatataatgtatcttccc |
49672105 |
T |
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