View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10684_5 (Length: 348)

Name: NF10684_5
Description: NF10684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10684_5
NF10684_5
[»] chr1 (2 HSPs)
chr1 (21-135)||(39367135-39367249)
chr1 (21-96)||(12190688-12190762)
[»] chr2 (2 HSPs)
chr2 (35-113)||(27150272-27150350)
chr2 (21-71)||(7703425-7703475)
[»] chr4 (2 HSPs)
chr4 (21-107)||(24558121-24558205)
chr4 (86-135)||(24558071-24558121)
[»] chr5 (1 HSPs)
chr5 (41-89)||(31571741-31571789)
[»] chr6 (1 HSPs)
chr6 (41-104)||(24631335-24631398)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 21 - 135
Target Start/End: Complemental strand, 39367249 - 39367135
Alignment:
Q  21 gagatgaacaggaaaacacgaggatcatgttaatttcttgttcaacaataacaacactcactcataagacttcctacacattaataactcaaaagacaaa 120  Q
    ||||||||||||| ||||| || ||||||||||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  39367249 gagatgaacaggacaacacaagaatcatgttaaacattttttcaacaataacaacactcactcataagacttcctacacattaataactcaaaaaacaaa 39367150  T
Q  121 ctcattgtgagccac 135  Q
    ||||||| |||||||    
T  39367149 ctcattgcgagccac 39367135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 12190688 - 12190762
Alignment:
Q  21 gagatgaacaggaaaacacgaggatcatgttaatt-tcttgttcaacaataacaacactcactcataagacttccta 96  Q
    ||||||||||||| ||||  |||| ||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  12190688 gagatgaacaggataaca--aggaacatgttaaaactcttgttcaacaataacaacactcactcataagacttccta 12190762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 113
Target Start/End: Complemental strand, 27150350 - 27150272
Alignment:
Q  35 aacacgaggatcatgttaatttcttgttcaacaataacaacactcactcataagacttcctacacattaataactcaaa 113  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27150350 aacacaaggatcatgttaaactcttgttcaacaataacaacactcactcataagacttcctacacattaataactcaaa 27150272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 7703425 - 7703475
Alignment:
Q  21 gagatgaacaggaaaacacgaggatcatgttaatttcttgttcaacaataa 71  Q
    ||||||||||||| ||||| |||||||||||||  ||||||||||||||||    
T  7703425 gagatgaacaggacaacacaaggatcatgttaaactcttgttcaacaataa 7703475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 24558205 - 24558121
Alignment:
Q  21 gagatgaacaggaaaacacgaggatcatgttaatttcttgttcaacaataacaacactcactcataagacttcctacacattaataa 107  Q
    |||||||||| || ||||  |||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24558205 gagatgaacaagacaaca--aggatcgtgttaagctcttgttcaacaataacaacactcactcataagacttcctacacattaataa 24558121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 24558121 - 24558071
Alignment:
Q  86 aagacttcctacacattaataactca-aaagacaaactcattgtgagccac 135  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  24558121 aagacttcctacacattaataactcagaaagacaaactcattgagagccac 24558071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 31571741 - 31571789
Alignment:
Q  41 aggatcatgttaatttcttgttcaacaataacaacactcactcataaga 89  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||    
T  31571741 aggatcatgttaaactcttgttcaacaataacaacactcactcataaga 31571789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 24631398 - 24631335
Alignment:
Q  41 aggatcatgttaatttcttgttcaacaataacaacactcactcataagacttcctacacattaa 104  Q
    |||||||| ||||  ||||||||||||| |||||| ||||||||||||| || ||||| |||||    
T  24631398 aggatcatattaaactcttgttcaacaagaacaactctcactcataagattttctacaaattaa 24631335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University