View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10685_high_1 (Length: 346)
Name: NF10685_high_1
Description: NF10685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10685_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 330
Target Start/End: Complemental strand, 42525478 - 42525164
Alignment:
| Q |
15 |
gggaagatactcaaaatgaaaggtacaacttaattatctccatatttagctcaattaatctatctccgtagaattaattttcaccaaatgtgctaaaatt |
114 |
Q |
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| T |
42525478 |
gggaagatactcaaaatgaaaggtacaacttaattatctccatatttagctcaattaatctatctccgtagaattaattttcaccaaatgtgctaaaatt |
42525379 |
T |
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| Q |
115 |
ggaagnnnnnnnntgatttcttaatgatcaagttatgtggttccattatagttttgtgattctgatctcaaaattgcagtagtgatgccgttgtagagac |
214 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42525378 |
ggaagaaaaaaa-tgatttcttaatgatcaagttatgtggttccattatagttttgtgattctgatctcaaaattgcagtagtgatgccgttgtagagac |
42525280 |
T |
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| Q |
215 |
ctcaaaattatttatattgaggccgcaattgcattgcagttgcggacaataatttaataacaaatacaactaaaaaggctacatataatttaaaaactac |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42525279 |
ctcaaaattatttatattgaggccgcaattgcattgcagttgcggacaataatttaataacaaatacaactaaaaaggctacatataatttaaaaactat |
42525180 |
T |
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| Q |
315 |
tcatacaatttcacct |
330 |
Q |
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|||||||||||||||| |
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| T |
42525179 |
tcatacaatttcacct |
42525164 |
T |
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