View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10685_high_3 (Length: 247)

Name: NF10685_high_3
Description: NF10685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10685_high_3
NF10685_high_3
[»] chr4 (8 HSPs)
chr4 (1-159)||(24056783-24056941)
chr4 (125-169)||(22905032-22905076)
chr4 (125-169)||(22956700-22956744)
chr4 (125-169)||(43441788-43441832)
chr4 (125-168)||(44645346-44645389)
chr4 (7-67)||(26728379-26728439)
chr4 (121-197)||(26728493-26728569)
chr4 (111-183)||(34821674-34821746)
[»] chr8 (2 HSPs)
chr8 (119-177)||(4903479-4903537)
chr8 (123-176)||(3961182-3961235)
[»] chr7 (1 HSPs)
chr7 (137-177)||(32016682-32016722)


Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 24056941 - 24056783
Alignment:
Q  1 gtatggtggtggggattggaagagaacggttgtttctcggtgaactctatgtacaagaagttggaggggatgcggtttgaggagggatcgctaacggaga 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24056941 gtatggtggtggggattggaagagaacggttggttctcggtgaactctatgtacaagaagttggaggggatgcggtttgaggagggatcgctaacagaga 24056842  T
Q  101 tgcaagtcaaggtgtttacgcatatttggaagagttcagctccgtccaaagtggtggct 159  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24056841 tgcgagtcaaggtgtttacgcatatttggaagagttcagctccgtccaaagtggtggct 24056783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 22905076 - 22905032
Alignment:
Q  125 tttggaagagttcagctccgtccaaagtggtggctttttcttgga 169  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  22905076 tttggaagagtccggctccgtccaaagtcgtggctttttcttgga 22905032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 22956744 - 22956700
Alignment:
Q  125 tttggaagagttcagctccgtccaaagtggtggctttttcttgga 169  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  22956744 tttggaagagtccggctccgtccaaagtcgtggctttttcttgga 22956700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 43441832 - 43441788
Alignment:
Q  125 tttggaagagttcagctccgtccaaagtggtggctttttcttgga 169  Q
    ||||||||||| | |||||||||||||| ||||||||||||||||    
T  43441832 tttggaagagtccggctccgtccaaagtcgtggctttttcttgga 43441788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 44645346 - 44645389
Alignment:
Q  125 tttggaagagttcagctccgtccaaagtggtggctttttcttgg 168  Q
    ||||||||||||| ||||| ||||| ||||||||||||||||||    
T  44645346 tttggaagagttcggctccatccaaggtggtggctttttcttgg 44645389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 26728379 - 26728439
Alignment:
Q  7 tggtggggattggaagagaacggttgtttctcggtgaactctatgtacaagaagttggagg 67  Q
    |||||| ||||||||| ||| ||| | ||  ||||||| ||||||||||||||||||||||    
T  26728379 tggtggagattggaagggaatggtggatttacggtgaaatctatgtacaagaagttggagg 26728439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 26728493 - 26728569
Alignment:
Q  121 catatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttctttatgattggatcccgacgaa 197  Q
    ||||||||||| ||| | |||||||| |||||||| |  || ||||||||| | ||| |||||||||| ||||||||    
T  26728493 catatttggaaaagtccggctccgtctaaagtggtagaattctcttggaaattgcttcatgattggataccgacgaa 26728569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 34821746 - 34821674
Alignment:
Q  111 ggtgtttacgcatatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttctttatgat 183  Q
    ||||||| |||| ||| |||||||||| ||||| || |||||||| |  ||| |||||||||||||| |||||    
T  34821746 ggtgtttgcgcaaattcggaagagttcggctccatctaaagtggtcgtctttgcttggaaacttcttcatgat 34821674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 4903479 - 4903537
Alignment:
Q  119 cgcatatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttctt 177  Q
    ||||||||||||||||  | || ||||| |||||||||| |||| ||||||||||||||    
T  4903479 cgcatatttggaagagcccggcaccgtcgaaagtggtggtttttacttggaaacttctt 4903537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 176
Target Start/End: Complemental strand, 3961235 - 3961182
Alignment:
Q  123 tatttggaagagttcagctccgtccaaagtggtggctttttcttggaaacttct 176  Q
    ||||||||| || |||||||| || || || |||||||||||||||||||||||    
T  3961235 tatttggaaaagctcagctccctcaaaggtcgtggctttttcttggaaacttct 3961182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 32016682 - 32016722
Alignment:
Q  137 cagctccgtccaaagtggtggctttttcttggaaacttctt 177  Q
    |||| ||||| ||||| ||||||||||||||||||||||||    
T  32016682 cagccccgtcaaaagttgtggctttttcttggaaacttctt 32016722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University