View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10685_low_1 (Length: 356)
Name: NF10685_low_1
Description: NF10685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10685_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 45680727 - 45680387
Alignment:
| Q |
1 |
atgttgttccttgtgctatacagtgctagcatttgcgctctctttgaggcgttccttgcttgcatgaagaaaagaatcaacaaaaggtgcaatgtgggat |
100 |
Q |
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| T |
45680727 |
atgttgttccttgtgctatacagtgctagcatttgcgctctctttgtggcgttctttgcttgcatgaagaaaagaatcaacaaaaggtgcaatgtgggat |
45680628 |
T |
|
| Q |
101 |
ccaactttccatgaagaatcggatcaagaatctcagagtattgaagagtctcgtcaaagaattatcataaagaaagattctcaatggtttttcctcctca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45680627 |
ccaactttccatgaagaatcggatcaagaatctcagagtatttaagagtctcgtcaaagaattatcataaaaaaagattctcaatggtttttcctcctca |
45680528 |
T |
|
| Q |
201 |
attatttgttaaagtttcttaagaacaccaaaaagttggcgatattcttctttgtttatcttatttttattgacattctaaagaaatggatggttaagca |
300 |
Q |
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|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45680527 |
attatttgttcaagtttctcaagaacaccaaaaagttggcgatattcttctttgtttatcttaattttattgacattctaaagaaatggatggttaagca |
45680428 |
T |
|
| Q |
301 |
aaattctttctttgatctatctgacagcataagcttctatc |
341 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |
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| T |
45680427 |
aaattctttctttgatctaattgacagcataagcttctatc |
45680387 |
T |
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