View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10685_low_6 (Length: 242)
Name: NF10685_low_6
Description: NF10685
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10685_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 69 - 219
Target Start/End: Original strand, 34570678 - 34570828
Alignment:
| Q |
69 |
tgaccagcaaagaaaaatagctccacattccaaaatttaaagtactaccaattctgaatattaatttgttagctccataatggcagcaacaatgtgtccg |
168 |
Q |
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| T |
34570678 |
tgaccagcaaagaaaaatagctccacattccaaaatctaaagtactaccaattctgatcattaatttgttagctccataatggcagcaacaatgtctcca |
34570777 |
T |
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| Q |
169 |
ttggcagcattgagagctttaacagctcttgatcttggcacaccatcttga |
219 |
Q |
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| T |
34570778 |
ttggcagctttgagagctttaacagctcttgatcttggcacaccagcttga |
34570828 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 34296392 - 34296439
Alignment:
| Q |
13 |
aagcaaaggtaaagattggcaaagcaccatttcaaaccgaacaagagc |
60 |
Q |
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| T |
34296392 |
aagcaaaggtaaagattggcaaagcaccatttcaaaccgaacaagagc |
34296439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 15887572 - 15887639
Alignment:
| Q |
107 |
aaagtactaccaattctgaatattaatttgttagctccataatggcagcaacaatgtgtccgttggca |
174 |
Q |
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| T |
15887572 |
aaagtactaccaattctgaccattagttagttagctctataatgctagcaacaatgtctccattggca |
15887639 |
T |
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